Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1762 233 5e-56 seq925 114 3e-20 >seq1762 Length=809008 Score = 233 bits (258), Expect = 5e-56 Identities = 621/941 (66%), Gaps = 12/941 (1%) Strand=Plus/Plus Query 363373 GATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTA-TCTCGTAT 363431 ||| ||| ||| || |||||| | |||||| | || ||||| || || || | Sbjct 693637 GATTTCGGTTATAATTATTTCGGGTTTAAGACTCTTGAACGTTCCTATTTACTCAAGT-T 693695 Query 363432 CAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCA 363491 |||||| | ||||||||||| || |||||||||||||||||||| || |||||||| || Sbjct 693696 GAATGGTAAAATTGTTGAACGGCCACAGCATATGTTAATGCGTGTAGCCATTGGTATACA 693755 Query 363492 TTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCAC 363551 | | |||| | ||||| || || || ||||| || | || | ||| || || Sbjct 693756 TGGTGAGGATATAGATGCGGCAATCGACACATACAATTTGCTTTCAGAACGTTACTTTAC 693815 Query 363552 GCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTT 363611 || ||| | |||||| | | ||| | || | ||||| | ||||| || || Sbjct 693816 ACATGCCTCACCAACACTCTTTGCTGCCGCTACCAAACAGCCACAATTATCTTCATGTTT 693875 Query 363612 TCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACA----CACTTAAGAATT 363667 ||| ||| ||| ||||| ||||| || || || ||| ||| ||| | | | Sbjct 693876 TCTATTAACTATGGTCGACGACTCCATTGATGGCATATTT-ACATCGGCACATCAA---T 693931 Query 363668 GTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCAC 363727 |||| | ||||| || ||| || || ||||| || | || | | || || Sbjct 693932 GTGCATTGATTTCTAAATCTGCTGGTGGTATTGGCTTAAATGTTCATTGTATACGCGCTA 693991 Query 363728 AGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 | || || ||| ||||| | || | | || ||||| |||| || ||| | ||| Sbjct 693992 AAGGCACTTCGATTGCGGGCACGAATGGCACA-TCAAATGGCTTGGTACCAATGTTGCGT 694050 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || || | || || | || || || || ||||| || || || ||| || ||| Sbjct 694051 GTTTTCAATAACGTAGCACGTTATGTGGATCAAGGTGGCGGTAAACGACCAGGAGCTTTT 694110 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 ||||| || | |||||| || || ||||||||||| ||| | || | |||||| Sbjct 694111 GCTATATACTTGGAGCCTTGGCACGCTGATATTTTTGAATTTTTGGATTTAAAGAAAAAT 694170 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || ||||||||||| || || | ||| | || ||||| | ||| | ||||| Sbjct 694171 ACCGGAAAAGAGGAGCATCGAGCTAGAGATTTATTTTATGCTTTGTGGATACCTGACTTA 694230 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 ||||||||||| || || ||| | || |||||||| | | || ||||| | ||||| Sbjct 694231 TTTATGAAGCGTGTTGAAGCAAATGAGGATTGGTCATTAATGTGTCCACATAAGTGTCCC 694290 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 || | ||| || |||||||| || | | ||||| ||| |||||| || Sbjct 694291 GGATTACACGAAGTTTGGGGTGAAGAATTCGAAAAGTTATACACAAAATATGAACAAGAA 694350 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 ||| ||| ||||| | || || || | || |||||| |||| || || |||||| Sbjct 694351 GGACGTGCTAATAAGAAAGTTAAAGCCCAAAGCCTTTGGTTTTCCATTATAGAATCGCAG 694410 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 | ||||| || ||||| |||||||| || || ||| | || || | ||| || || Sbjct 694411 GTGGAGACGGGCACACCGTATATGTTATATAAGGATGCTTGTAATAGAAAGAGTAATCAA 694470 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| | |||| |||||| | || || |||| || || ||| |||| || | || Sbjct 694471 CAGAATATTGGCACAATTAAATGCAGTAATTTATGCACAGAAATTGTTGAGTATTCAGCA 694530 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 || |||||| || ||||| || | || ||||| || || Sbjct 694531 CCTGACGAGGTAGCTGTATGCAATTTAGCATCGATTGCCCT 694571 >seq925 Length=3171676 Score = 114 bits (126), Expect = 3e-20 Identities = 412/622 (66%), Gaps = 32/622 (5%) Strand=Plus/Plus Query 22168 GATTGGCCAAAACTTACAGAAAACGAACAACATTTTAT--CAAATATATTCTAGCATTCT 22225 |||||| || |||||| || |||||| ||||||| | | | |||| ||| || | Sbjct 2021148 GATTGGGCACGACTTACTGACAACGAAAGACATTTTGTTTCGCACGTATT--AGCCTTTT 2021205 Query 22226 TTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCATCT-GAAATT 22284 |||| || | || ||||| || ||| ||| | || | | ||| || ||| || Sbjct 2021206 TTGCCGCCTCGGATGGTATTGTAAATGAAAATTTGGT-AGAACGTTTCAGTCAAGAAGTT 2021264 Query 22285 CAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCG 22344 ||| | ||||| | |||||||| ||| | ||||| || |||||||| ||| | Sbjct 2021265 CAAGTAACGGAGGCGCGGTGTTTCTACGGTTTTCAAATCGCTATGGAAAATGTGCACTCA 2021324 Query 22345 GAAACATATTCTATGATGCTACAGTCACTCGTAGAAGATAAAGACG---AACAACGAAAC 22401 |||| ||| || || || | | || | || | ||| |||| ||||| || || Sbjct 2021325 GAAATGTATAGCAT-AT--TA-ATTGACACATATAT--TAAGGACGGCAAACAAAGAGAC 2021378 Query 22402 T---TATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTG 22458 | | ||| || ||| || || | | ||||| |||||| |||||||||||| Sbjct 2021379 TATTTGTTCAATGCAATTGAGACGATGCCTGCTGTTAAGCGTAAGGCTGATTGGGCGCTG 2021438 Query 22459 AAATGGATGAA--CAATGAACGTTCA-TTCGCGGAACGTCTTATTGCATTTGCTGTGGTT 22515 ||||| ||| | | | || | |||||| | ||||||||||| | ||| Sbjct 2021439 GCTTGGATTTCTTCAAAGTCTGCAAACTTTGGTGAACGTATAATTGCATTTGCCGCTGTT 2021498 Query 22516 GAAGGCATTTTCTTTTCTGGAGCA-TTTTGTG-CAATCTTTTGGCTaaaaaaaCGTGCAA 22573 |||||||| |||||| || || ||||| ||||||||||||| || ||||||| Sbjct 2021499 GAAGGCATATTCTTTAGCGG--CAGTTTTGCATCAATCTTTTGGCTTAAGAAACGTGGTT 2021556 Query 22574 TTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCG 22633 | |||||||| |||| || || |||||||| || || || |||||| | ||| | Sbjct 2021557 TAATGCCGGGCTTAACATTCTCCAATGAGTTGATCTCACGTGACGAGGGTTTACATTGTG 2021616 Query 22634 ATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCA-TATGAAAC-TGT 22691 |||| |||||| || | | || | ||| | || || |||| ||| | | ||| | | Sbjct 2021617 ATTTCGCGTGTTTGATGT-TC--CAACATTTGATACAGAAAC--CCAGCAGGGAACGTAT 2021671 Query 22692 ACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACC 22751 |||| || || | | |||||| || |||||| ||| | || || ||||| Sbjct 2021672 TATTGAAATCATATCTGAAGCAGTTAAAATTGAACAAGAATTCTTAACAGACGCATTACC 2021731 Query 22752 AGTAAGTCTCATTGGTATCAAT 22773 |||| || |||||||| ||| Sbjct 2021732 TGTAAACCTAATTGGTATGAAT 2021753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303323441212292