Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 122 7e-23
seq1310 105 6e-18
seq145 84.2 2e-11
>seq1762
Length=809008
Score = 122 bits (134), Expect = 7e-23
Identities = 671/1057 (63%), Gaps = 45/1057 (4%)
Strand=Plus/Minus
Query 132261 ACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAGG 132320
||||||| || ||||| || || |||| |||||| || || | || || |||||| |
Sbjct 695077 ACGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTG 695018
Query 132321 CAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCAGT 132380
||| | ||| || ||||| | || ||| | |||| ||| | ||| ||| |
Sbjct 695017 CAAGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAAT 694958
Query 132381 TCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACTTG 132440
|||| || ||| ||| | ||| ||||| |||| |||||||| ||| | ||
Sbjct 694957 TCCATAGTTCAGTCGGCTTTT---TATCCCACATATCATACTGTAAAATACCTTTGCTAA 694901
Query 132441 CAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTCTGAC 132500
| || || || | ||||| ||||| | || | || || | ||| ||| |
Sbjct 694900 CCGGTGAACCTTCATAAGTTTCGTAAGGCCCAAATTTTTCAGCCAATTCGCAGCTG-GCT 694842
Query 132501 TC-AGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTGTTGA 132559
|| | |||||||| ||||| || || | |||| | ||||||| ||||||||
Sbjct 694841 TCTAAAGCACCATAGTAAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCG 694782
Query 132560 CTGTCGTAGGGCAAATTTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCCGATACCG 132619
|| ||||| || | | | || || || || | || || | || ||||||
Sbjct 694781 CTTTCGTAAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCG 694722
Query 132620 ATGGGTCTATGTTTAAAATTCGATA-CTTGTGCGCTAGTCAGCGGATAAAAGTTTTTGTC 132678
|| || | ||| | ||||| ||| |||| || || || ||||| |||| | ||
Sbjct 694721 ATCGGACGATGCCTGAAATTAGATTTCTTG-GCTTCAGGCAATGGATAGTGGTTTATATC 694663
Query 132679 TATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTATATAGCGATTCAAAGTC 132738
|| |||||||| | ||| || || ||| |||| | || || ||| ||
Sbjct 694662 AATGATTTTATTTAAATTCCGCGTCACGGTCTTAGTGACTTCCTTGAGGCGTTTAAAATC 694603
Query 132739 AAAGTTTTTAGTCCTTTTGTTGGCA-AAACA-ATTGACGGCAATCGAGGCCAAATTGCAT 132796
| ||||| ||| || || | ||||| ||||| ||||||||| || |||||||||
Sbjct 694602 GTATTTTTT-GTC----TGGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCAT 694548
Query 132797 ACGGCTGTCTCTTTATTATCGCTATACTGTACGATTTCTGCACACAAATTACTGTTTCGA 132856
|| ||| ||| | | | ||||| || ||||||| || ||||||||| | |
Sbjct 694547 ACAGCTACCTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTA 694488
Query 132857 ATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTACGTT-ATCTTTATGCAACATGTA 132915
|| || | || | |||||| | || || |||| ||| |||| ||||| ||
Sbjct 694487 ATTGTGCCAATATTCTGTTGATTACTCTT-TCTATTACAAGCATCCTTATATAACATATA 694429
Query 132916 CGGACCTCCGGTTTCGACCTGAATTTCGATAATTTTTCTGTGAAGATCTAACGCCAAAAT 132975
||| || || || ||||| ||| ||||| ||| | | || || |
Sbjct 694428 CGGTGTGCCCGTCTCCACCTGCGATTCTATAATG-------GAAAACCAAAGGC-----T 694381
Query 132976 TTGTTCTTTAAACTTGCCCTGAG--------TCTCGTA---ACTTTC-GTATAATCGCTC 133023
||| |||||| || | || ||| || | ||| |||||| ||
Sbjct 694380 TTGGGCTTTAACTTTCTTATTAGCACGTCCTTCTTGTTCATATTTTGTGTATAACTTTTC 694321
Query 133024 AAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACACATCAATGACCA 133083
|||||||| || | |||| || |||||||||| | |||||||| ||||||||
Sbjct 694320 GAATTCTTCACCCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCA 694261
Query 133084 TTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCACATGGCAAAAAATAA 133143
| || ||| || | ||||| || || |||| |||||| ||| |||||||
Sbjct 694260 ATCCTCATTTGCTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAA 694201
Query 133144 ATCGCGAGCCTTCATA-TCTTCCGCGCCCATATTTCGTTTCAAGTCCaaaaaagtaaaaa 133202
||| | ||| | || || || || ||||| || || |||||||| |||||
Sbjct 694200 ATCTCTAGC-TCGATGCTCCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAA 694142
Query 133203 TGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTCCTTTTA---CCTCCCT 133259
| || || ||||||||||| | |||| || ||||| ||| | |||| || || |
Sbjct 694141 TATCAGCGTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTT 694082
Query 133260 GATCCACATGTCTAAGCATGCTGTTGAAGACACGCAA 133296
||||||||| | | | | ||||| ||||||||
Sbjct 694081 GATCCACATAACGTGCTACGTTATTGAAAACACGCAA 694045
>seq1310
Length=3030561
Score = 105 bits (116), Expect = 6e-18
Identities = 160/225 (71%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 23979 TAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAA 24038
||| | ||||||||||| | ||||| |||||| | ||||| || | || || | ||
Sbjct 644969 TAGACGAACAAAATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAG 645028
Query 24039 GTCGAGGCCAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCAT 24097
||||| |||| | ||||||||||| | |||||| || || ||||||||||| ||
Sbjct 645029 GTCGA-GCCATCTGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTAT 645087
Query 24098 ACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGT 24157
|| || |||||||| | |||| | || |||||| ||| | ||||||| | | |
Sbjct 645088 CCCACCAGATCAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTT 645147
Query 24158 CAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
|||||| || || ||||| || || || |||| || |||||
Sbjct 645148 GTCCGATTACAATATCCAAAAGGAGTCAACCCTTCACTTGGTGTT 645192
>seq145
Length=1338480
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | || || ||||| | || || || | || || | || ||||| ||
Sbjct 899038 AATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCTC 898979
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|| || |||||||| || || ||| ||| || |||||||| || || ||||||||
Sbjct 898978 GGATACTATCGAGCATGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCCCCCGATCA 898919
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168
||| | | |||| || || || ||||| ||||||| | || | ||| || ||||
Sbjct 898918 ACAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCG-TACTTTAGCTGACTATA 898860
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218
| || ||||| || ||||| | || |||||| | | | ||||| |||
Sbjct 898859 ATATCCAAAAGGAGTCTACCTTACACTTAGTGCTGCGTCTTAGAGGTGGA 898810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429926536839930
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |