Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1762 122 7e-23 seq1310 105 6e-18 seq145 84.2 2e-11 >seq1762 Length=809008 Score = 122 bits (134), Expect = 7e-23 Identities = 671/1057 (63%), Gaps = 45/1057 (4%) Strand=Plus/Minus Query 132261 ACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAGG 132320 ||||||| || ||||| || || |||| |||||| || || | || || |||||| | Sbjct 695077 ACGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTG 695018 Query 132321 CAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCAGT 132380 ||| | ||| || ||||| | || ||| | |||| ||| | ||| ||| | Sbjct 695017 CAAGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAAT 694958 Query 132381 TCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACTTG 132440 |||| || ||| ||| | ||| ||||| |||| |||||||| ||| | || Sbjct 694957 TCCATAGTTCAGTCGGCTTTT---TATCCCACATATCATACTGTAAAATACCTTTGCTAA 694901 Query 132441 CAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTCTGAC 132500 | || || || | ||||| ||||| | || | || || | ||| ||| | Sbjct 694900 CCGGTGAACCTTCATAAGTTTCGTAAGGCCCAAATTTTTCAGCCAATTCGCAGCTG-GCT 694842 Query 132501 TC-AGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTGTTGA 132559 || | |||||||| ||||| || || | |||| | ||||||| |||||||| Sbjct 694841 TCTAAAGCACCATAGTAAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCG 694782 Query 132560 CTGTCGTAGGGCAAATTTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCCGATACCG 132619 || ||||| || | | | || || || || | || || | || |||||| Sbjct 694781 CTTTCGTAAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCG 694722 Query 132620 ATGGGTCTATGTTTAAAATTCGATA-CTTGTGCGCTAGTCAGCGGATAAAAGTTTTTGTC 132678 || || | ||| | ||||| ||| |||| || || || ||||| |||| | || Sbjct 694721 ATCGGACGATGCCTGAAATTAGATTTCTTG-GCTTCAGGCAATGGATAGTGGTTTATATC 694663 Query 132679 TATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTATATAGCGATTCAAAGTC 132738 || |||||||| | ||| || || ||| |||| | || || ||| || Sbjct 694662 AATGATTTTATTTAAATTCCGCGTCACGGTCTTAGTGACTTCCTTGAGGCGTTTAAAATC 694603 Query 132739 AAAGTTTTTAGTCCTTTTGTTGGCA-AAACA-ATTGACGGCAATCGAGGCCAAATTGCAT 132796 | ||||| ||| || || | ||||| ||||| ||||||||| || ||||||||| Sbjct 694602 GTATTTTTT-GTC----TGGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCAT 694548 Query 132797 ACGGCTGTCTCTTTATTATCGCTATACTGTACGATTTCTGCACACAAATTACTGTTTCGA 132856 || ||| ||| | | | ||||| || ||||||| || ||||||||| | | Sbjct 694547 ACAGCTACCTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTA 694488 Query 132857 ATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTACGTT-ATCTTTATGCAACATGTA 132915 || || | || | |||||| | || || |||| ||| |||| ||||| || Sbjct 694487 ATTGTGCCAATATTCTGTTGATTACTCTT-TCTATTACAAGCATCCTTATATAACATATA 694429 Query 132916 CGGACCTCCGGTTTCGACCTGAATTTCGATAATTTTTCTGTGAAGATCTAACGCCAAAAT 132975 ||| || || || ||||| ||| ||||| ||| | | || || | Sbjct 694428 CGGTGTGCCCGTCTCCACCTGCGATTCTATAATG-------GAAAACCAAAGGC-----T 694381 Query 132976 TTGTTCTTTAAACTTGCCCTGAG--------TCTCGTA---ACTTTC-GTATAATCGCTC 133023 ||| |||||| || | || ||| || | ||| |||||| || Sbjct 694380 TTGGGCTTTAACTTTCTTATTAGCACGTCCTTCTTGTTCATATTTTGTGTATAACTTTTC 694321 Query 133024 AAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACACATCAATGACCA 133083 |||||||| || | |||| || |||||||||| | |||||||| |||||||| Sbjct 694320 GAATTCTTCACCCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCA 694261 Query 133084 TTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCACATGGCAAAAAATAA 133143 | || ||| || | ||||| || || |||| |||||| ||| ||||||| Sbjct 694260 ATCCTCATTTGCTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAA 694201 Query 133144 ATCGCGAGCCTTCATA-TCTTCCGCGCCCATATTTCGTTTCAAGTCCaaaaaagtaaaaa 133202 ||| | ||| | || || || || ||||| || || |||||||| ||||| Sbjct 694200 ATCTCTAGC-TCGATGCTCCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAA 694142 Query 133203 TGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTCCTTTTA---CCTCCCT 133259 | || || ||||||||||| | |||| || ||||| ||| | |||| || || | Sbjct 694141 TATCAGCGTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTT 694082 Query 133260 GATCCACATGTCTAAGCATGCTGTTGAAGACACGCAA 133296 ||||||||| | | | | ||||| |||||||| Sbjct 694081 GATCCACATAACGTGCTACGTTATTGAAAACACGCAA 694045 >seq1310 Length=3030561 Score = 105 bits (116), Expect = 6e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 23979 TAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAA 24038 ||| | ||||||||||| | ||||| |||||| | ||||| || | || || | || Sbjct 644969 TAGACGAACAAAATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAG 645028 Query 24039 GTCGAGGCCAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCAT 24097 ||||| |||| | ||||||||||| | |||||| || || ||||||||||| || Sbjct 645029 GTCGA-GCCATCTGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTAT 645087 Query 24098 ACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGT 24157 || || |||||||| | |||| | || |||||| ||| | ||||||| | | | Sbjct 645088 CCCACCAGATCAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTT 645147 Query 24158 CAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||| || || ||||| || || || |||| || ||||| Sbjct 645148 GTCCGATTACAATATCCAAAAGGAGTCAACCCTTCACTTGGTGTT 645192 >seq145 Length=1338480 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || ||||| | || || || | || || | || ||||| || Sbjct 899038 AATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCTC 898979 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || |||||||| || || ||| ||| || |||||||| || || |||||||| Sbjct 898978 GGATACTATCGAGCATGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCCCCCGATCA 898919 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||| | | |||| || || || ||||| ||||||| | || | ||| || |||| Sbjct 898918 ACAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCG-TACTTTAGCTGACTATA 898860 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 | || ||||| || ||||| | || |||||| | | | ||||| ||| Sbjct 898859 ATATCCAAAAGGAGTCTACCTTACACTTAGTGCTGCGTCTTAGAGGTGGA 898810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429926536839930