Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1762 147 2e-30 seq1310 122 8e-23 seq454 118 1e-21 seq145 114 1e-20 >seq1762 Length=809008 Score = 147 bits (162), Expect = 2e-30 Identities = 711/1113 (64%), Gaps = 32/1113 (3%) Strand=Plus/Minus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 || || || ||||||||||| |||| | |||||| || ||| | || || ||| | Sbjct 695135 TGGTTTACAACCTGAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTAC 695076 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 || |||||||| || ||||| |||| ||||| || || | ||||| |||||| || Sbjct 695075 GGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCA 695016 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 | | ||| || ||||| | || || ||||| || | ||| || | | | ||||| | Sbjct 695015 AGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTC 694956 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 ||||| ||||||| | |||||||| || ||||| ||||| || | ||| | || Sbjct 694955 CATAGTTCAGTCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGT 694896 Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTT-GGCGAGCTCGCAACTCGCCTCCAG 145353 |||| | | | |||| |||| || |||| || | ||||| || || || | Sbjct 694895 GAACCTTCATAAGTTTCGTAA-GGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAA 694837 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTC 145413 ||| || | |||||||| || ||||| || | || | |||| ||||| || Sbjct 694836 AGCACCATAGTAAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTC 694777 Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 ||| || ||||| || | || || || || | || |||| || | ||||| || Sbjct 694776 GTAAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGG 694717 Query 145474 CCGATGTTTCATGTTGCTCATCCTCGC-CGACTCGATAGGATATCGATTACGGTCGATAA 145532 ||||| | | || || | || | | || ||||| | || || || | Sbjct 694716 ACGATGCCTGAAATTAGATTTCTTGGCTTCAGGCAAT-GGATAGTGGTTTATATCAATGA 694658 Query 145533 TTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTC--AAA 145590 ||||||| || || ||| || ||| || | | | | || ||| || | Sbjct 694657 TTTTATTTAAATTCCGCGTCACGGTCTTAGTGACTTCCTTGAGGCGTTTAAAATCGTATT 694598 Query 145591 CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGC 145650 | || || | ||| | |||||| ||| ||||| || ||||| || || || Sbjct 694597 TTTTGTCTGGTGTA-----ACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGC 694543 Query 145651 CGTCTCCTCGGCGTCGCTG--TATTGTACGATCTCGGCGCACAAATTGCTACATTTGATG 145708 ||| || | || |||| || | || || || | ||| ||||| || ||||| || Sbjct 694542 TACCTCGTCAG-GT-GCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATT 694485 Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768 || || | ||| || |||||||| || || || || || ||||| || | ||| |||||| Sbjct 694484 GTGCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGT 694425 Query 145769 CCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTC-CTGCGCACGCACC 145825 ||| ||||||||||||| || | || ||||| ||| | || || || Sbjct 694424 GTGCCCGTCTCCACCTGCGATTCTATAATGGAAAAC---CAAAGGCTTTGGGCTTTAACT 694368 Query 145826 TGCTGCTGGTAG--CGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAAC 145883 | || | ||| || || |||| ||| ||||| |||| | || || || | || Sbjct 694367 TTCT--TATTAGCACGTCCTTCTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCAC 694310 Query 145884 CGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGG 145943 | | ||| | ||||||||||| | |||||||| | ||||| | | || | Sbjct 694309 CCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCAATCCTCATTTG 694250 Query 145944 CGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGC 146001 | | || |||| |||||| || || || | ||||| || || | || || | || | Sbjct 694249 CTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTC 694190 Query 146002 TTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTG 146061 ||| ||||| || | ||| ||| |||| | | | | || || ||||| Sbjct 694189 GATGC--TCCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTG 694132 Query 146062 CCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGTCCACGTG 146118 ||| || || | || | || | |||||| |||||| |||||| || ||||| | Sbjct 694131 CCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATA 694072 Query 146119 ACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 |||| | | ||| || || || |||| ||| || Sbjct 694071 ACGTGCTACGTTATTGAAAACACGCAACATTGG 694039 >seq1310 Length=3030561 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| ||| || || | ||| ||||||||||| || ||||||||| | Sbjct 645207 CCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGAC 645148 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | || ||||| ||| |||| ||||| || || || || ||| Sbjct 645147 AAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 645088 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| |||| | || | || || | | ||||| Sbjct 645087 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACC 645028 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| || || ||||| || ||||||||||| Sbjct 645027 TCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981 >seq454 Length=983520 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||||||||| || ||||| | || || |||||||| |||||||| ||| Sbjct 254448 GCCACCACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 254507 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || |||||||||||||| || |||| ||||| || || || ||||| Sbjct 254508 CAAGGTGCGTCCATCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGG 254567 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||| | | ||| | ||||| | | || | Sbjct 254568 AATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAAC 254627 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| ||||| | || || ||||| || ||||| Sbjct 254628 CTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254675 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||||||||| || ||||| | ||| ||||||||||| |||||||| || | Sbjct 254677 CCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 254736 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || || || ||||| || | || ||||| || || || || || Sbjct 254737 AAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGA 254796 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||||| | ||| | ||||| | | |||| Sbjct 254797 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGACC 254856 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| ||||| | || || ||||| || ||||| Sbjct 254857 TCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903 >seq145 Length=1338480 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| | | |||||||||||| |||| ||| ||||||||||| || || || || ||| Sbjct 898811 CCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCT 898870 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || || || || || || || ||| | |||||||| || || || || || Sbjct 898871 -AAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGG 898929 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 || |||||||| || ||| ||| || ||| | ||||| | |||||| | || |||| Sbjct 898930 AATACCTTCTTTATC-TTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGA 898988 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| || || ||||| |||||||| ||||| Sbjct 898989 CCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472002144311040