Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 147 2e-30
seq1310 122 8e-23
seq454 118 1e-21
seq145 114 1e-20
>seq1762
Length=809008
Score = 147 bits (162), Expect = 2e-30
Identities = 711/1113 (64%), Gaps = 32/1113 (3%)
Strand=Plus/Minus
Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114
|| || || ||||||||||| |||| | |||||| || ||| | || || ||| |
Sbjct 695135 TGGTTTACAACCTGAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTAC 695076
Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174
|| |||||||| || ||||| |||| ||||| || || | ||||| |||||| ||
Sbjct 695075 GGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCA 695016
Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234
| | ||| || ||||| | || || ||||| || | ||| || | | | ||||| |
Sbjct 695015 AGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTC 694956
Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294
||||| ||||||| | |||||||| || ||||| ||||| || | ||| | ||
Sbjct 694955 CATAGTTCAGTCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGT 694896
Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTT-GGCGAGCTCGCAACTCGCCTCCAG 145353
|||| | | | |||| |||| || |||| || | ||||| || || || |
Sbjct 694895 GAACCTTCATAAGTTTCGTAA-GGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAA 694837
Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTC 145413
||| || | |||||||| || ||||| || | || | |||| ||||| ||
Sbjct 694836 AGCACCATAGTAAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTC 694777
Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473
||| || ||||| || | || || || || | || |||| || | ||||| ||
Sbjct 694776 GTAAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGG 694717
Query 145474 CCGATGTTTCATGTTGCTCATCCTCGC-CGACTCGATAGGATATCGATTACGGTCGATAA 145532
||||| | | || || | || | | || ||||| | || || || |
Sbjct 694716 ACGATGCCTGAAATTAGATTTCTTGGCTTCAGGCAAT-GGATAGTGGTTTATATCAATGA 694658
Query 145533 TTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTC--AAA 145590
||||||| || || ||| || ||| || | | | | || ||| || |
Sbjct 694657 TTTTATTTAAATTCCGCGTCACGGTCTTAGTGACTTCCTTGAGGCGTTTAAAATCGTATT 694598
Query 145591 CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGC 145650
| || || | ||| | |||||| ||| ||||| || ||||| || || ||
Sbjct 694597 TTTTGTCTGGTGTA-----ACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGC 694543
Query 145651 CGTCTCCTCGGCGTCGCTG--TATTGTACGATCTCGGCGCACAAATTGCTACATTTGATG 145708
||| || | || |||| || | || || || | ||| ||||| || ||||| ||
Sbjct 694542 TACCTCGTCAG-GT-GCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATT 694485
Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768
|| || | ||| || |||||||| || || || || || ||||| || | ||| ||||||
Sbjct 694484 GTGCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGT 694425
Query 145769 CCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTC-CTGCGCACGCACC 145825
||| ||||||||||||| || | || ||||| ||| | || || ||
Sbjct 694424 GTGCCCGTCTCCACCTGCGATTCTATAATGGAAAAC---CAAAGGCTTTGGGCTTTAACT 694368
Query 145826 TGCTGCTGGTAG--CGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAAC 145883
| || | ||| || || |||| ||| ||||| |||| | || || || | ||
Sbjct 694367 TTCT--TATTAGCACGTCCTTCTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCAC 694310
Query 145884 CGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGG 145943
| | ||| | ||||||||||| | |||||||| | ||||| | | || |
Sbjct 694309 CCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCAATCCTCATTTG 694250
Query 145944 CGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGC 146001
| | || |||| |||||| || || || | ||||| || || | || || | || |
Sbjct 694249 CTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTC 694190
Query 146002 TTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTG 146061
||| ||||| || | ||| ||| |||| | | | | || || |||||
Sbjct 694189 GATGC--TCCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTG 694132
Query 146062 CCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGTCCACGTG 146118
||| || || | || | || | |||||| |||||| |||||| || ||||| |
Sbjct 694131 CCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATA 694072
Query 146119 ACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151
|||| | | ||| || || || |||| ||| ||
Sbjct 694071 ACGTGCTACGTTATTGAAAACACGCAACATTGG 694039
>seq1310
Length=3030561
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||||| ||| || || | ||| ||||||||||| || ||||||||| |
Sbjct 645207 CCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGAC 645148
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| || || | || ||||| ||| |||| ||||| || || || || |||
Sbjct 645147 AAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 645088
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||||||||| |||||| |||| | || | || || | | |||||
Sbjct 645087 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACC 645028
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| ||||| || || ||||| || |||||||||||
Sbjct 645027 TCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981
>seq454
Length=983520
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| |||||||||| || ||||| | || || |||||||| |||||||| |||
Sbjct 254448 GCCACCACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 254507
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| |||||| || |||||||||||||| || |||| ||||| || || || |||||
Sbjct 254508 CAAGGTGCGTCCATCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGG 254567
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| ||||| ||||| ||| || ||| | | ||| | ||||| | | || |
Sbjct 254568 AATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAAC 254627
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | |||||| ||||| | || || ||||| || |||||
Sbjct 254628 CTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254675
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||||||||||| || ||||| | ||| ||||||||||| |||||||| || |
Sbjct 254677 CCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 254736
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| ||| || || || ||||| || | || ||||| || || || || ||
Sbjct 254737 AAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGA 254796
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| || || ||| || ||||| | ||| | ||||| | | ||||
Sbjct 254797 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGACC 254856
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | |||||| ||||| | || || ||||| || |||||
Sbjct 254857 TCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903
>seq145
Length=1338480
Score = 114 bits (126), Expect = 1e-20
Identities = 166/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066
||||| | | |||||||||||| |||| ||| ||||||||||| || || || || |||
Sbjct 898811 CCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCT 898870
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| || || || || || || || || ||| | |||||||| || || || || ||
Sbjct 898871 -AAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGG 898929
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
|| |||||||| || ||| ||| || ||| | ||||| | |||||| | || ||||
Sbjct 898930 AATACCTTCTTTATC-TTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGA 898988
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| ||||| || || ||||| |||||||| |||||
Sbjct 898989 CCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472002144311040
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