Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq113 161 7e-35
seq454 152 3e-32
seq145 134 9e-27
seq1310 131 1e-25
seq322 98.7 7e-16
>seq113
Length=1127188
Score = 161 bits (178), Expect = 7e-35
Identities = 160/207 (77%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221
||||| || | || |||||||||||||| | ||| ||||| ||||| ||||||||
Sbjct 711642 ATGGGTTCCGTCAATGTAAATCGTAATGTCACCGACATTTTCTATCGCTATAAAATGCCA 711701
Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281
|||||| || ||||||||||| || || || || ||||| ||||||||||| || |||
Sbjct 711702 CGCATCCAAGCTAAGGTCGAGGGCAAAGGTAATGGCATTAAGACCGTCATTGTGAATATG 711761
Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341
||||||| || || | |||||||| |||||||| ||||| || || || || ||
Sbjct 711762 GCTGAAGTGGCGCGTGCCATTGGACGCCCGGCCACCTATCCGACCAAGTACTTTGGCTGT 711821
Query 6342 GAACTTGGCGCTCAGACGCAGTTTGAT 6368
||| | ||||| ||||| |||||||||
Sbjct 711822 GAATTGGGCGCGCAGACACAGTTTGAT 711848
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
|| || || |||||||| || || |||||| | | ||| ||||||| |||| |||
Sbjct 712433 AATGAACGATTCATCGTAAATGGTTCGCATGATGCCAGCAAATTGCAGGATCTACTGGAC 712492
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494
|| || || ||||| | || |||||| ||||||||||| ||||| || || | |
Sbjct 712493 GGTTTCATACGCAAATACGTCTTGTGTCCCGAATGCGATAATCCGGAAACTGATTTAACC 712552
Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554
|| || ||| || | || || || || | |||||||| ||||||| || ||
Sbjct 712553 GTTTCGGCCAGGAATCAAACAATTTCGCAAGCATGCAAAGCCTGCGGTTTTCACGGTCTC 712612
Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCACCT 6605
|| | | ||||| | ||||| ||||| |||| ||||||||| ||
Sbjct 712613 CTCAAAGTCAATCACAAGGTGAACACGTTCATTTTGAAAAATCCTCCAACT 712663
>seq454
Length=983520
Score = 152 bits (168), Expect = 3e-32
Identities = 171/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | ||||||||| ||||||||||| || ||||||||| || ||||| ||||
Sbjct 254675 TACCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 254734
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||||| ||| |||| || | |||||| |||||||| || | ||||||||||| | ||
Sbjct 254735 ACAAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGG 254794
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||| || || || || ||| ||||||| || |||||| ||| |
Sbjct 254795 GAATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGA 254854
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || || || || ||||| || |||||||| || ||||| || |||||
Sbjct 254855 CCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903
Score = 140 bits (154), Expect = 2e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | ||||||||| |||||||| ||||| |||||||| || ||||| || |||
Sbjct 254449 CCACCACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 254508
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| ||| | || |||| || || |||||||| || | ||||||||||| | ||
Sbjct 254509 AAGGTGCGTCCATCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 254568
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||| |||||| || || ||||||||||| || |||||| ||||||
Sbjct 254569 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAACC 254628
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || || || ||||| || |||||||| || ||||| || |||||
Sbjct 254629 TCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254675
Score = 113 bits (124), Expect = 3e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186
|| ||||| || ||||| ||||||||| ||| | || || || || || ||||||||
Sbjct 254257 TCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCAAAG 254316
Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246
|| | ||||||||||| | ||| | ||||| ||||| ||||| ||||||||||
Sbjct 254317 ATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACATTC 254376
Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306
| | ||||| |||||||| || || || ||||| || ||||| ||||| |||
Sbjct 254377 TCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTAACG 254436
Query 38307 AATATCTGCATG 38318
|| || ||||||
Sbjct 254437 AAAATTTGCATG 254448
Score = 96.9 bits (106), Expect = 2e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||| | ||||||||| || || |||||||| || ||||| || || || |||| |
Sbjct 253521 ACGTAGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGTCC 253580
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || | || || || || || || | || |||||||| | |||| ||||| ||
Sbjct 253581 ATCTTCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTT 253640
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
||| || || ||||||||||| || |||||| ||| ||||| || || ||
Sbjct 253641 GTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACTTCCAAGGTGAT 253700
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || |||||||| || || ||||| || |||||
Sbjct 253701 GGTCTTGCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736
Score = 91.5 bits (100), Expect = 1e-13
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | |||||||| ||||||||||| || ||||||||| || ||||| ||||
Sbjct 253736 TACCACCACGCAAACGCAGGACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 253795
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATAT 38188
||||| ||| |||| || | |||||| |||||||| ||
Sbjct 253796 ACAAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAGAT 253835
Score = 91.5 bits (100), Expect = 1e-13
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | |||||||| ||||||||||| || ||||||||| || ||||| ||||
Sbjct 254903 TACCACCGCGCAAACGCAGGACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 254962
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATAT 38188
||||| ||| |||| || | |||||| |||||||| ||
Sbjct 254963 ACAAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAGAT 255002
>seq145
Length=1338480
Score = 134 bits (148), Expect = 9e-27
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | ||||| ||| || || | || ||||||||| ||||| || ||||
Sbjct 898811 CCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCT 898870
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
||| ||| | || || | ||||||||| || || |||| ||||||||||||| |||
Sbjct 898871 AAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGA 898930
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||||| || ||||||| ||| |||| || || |||||| ||| ||
Sbjct 898931 ATACCTTCTTTATCTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGACC 898990
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || |||||||| | |||||||||||| || |||||
Sbjct 898991 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037
>seq1310
Length=3030561
Score = 131 bits (144), Expect = 1e-25
Identities = 168/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | || |||||||||||| ||||| || ||||||||| ||||||||||| |
Sbjct 645209 TACCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGG 645150
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||||| || | || || |||||||| ||||| || || | ||||||||||| | |
Sbjct 645149 ACAAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTG 645090
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||||||||| ||||| || ||||| | || || || || |
Sbjct 645089 GGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGA 645030
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
| || || || || || ||||| |||| ||||| || || |||||||| ||
Sbjct 645029 CCTCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCATTTT 644978
>seq322
Length=274070
Score = 98.7 bits (108), Expect = 7e-16
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 56665 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 56606
Query 20007 GGTAATATTTAG 20018
||| ||||||||
Sbjct 56605 GGTTATATTTAG 56594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334939827602786
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |