Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq113 161 7e-35 seq454 152 3e-32 seq145 134 9e-27 seq1310 131 1e-25 seq322 98.7 7e-16 >seq113 Length=1127188 Score = 161 bits (178), Expect = 7e-35 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| || | || |||||||||||||| | ||| ||||| ||||| |||||||| Sbjct 711642 ATGGGTTCCGTCAATGTAAATCGTAATGTCACCGACATTTTCTATCGCTATAAAATGCCA 711701 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| || ||||||||||| || || || || ||||| ||||||||||| || ||| Sbjct 711702 CGCATCCAAGCTAAGGTCGAGGGCAAAGGTAATGGCATTAAGACCGTCATTGTGAATATG 711761 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 ||||||| || || | |||||||| |||||||| ||||| || || || || || Sbjct 711762 GCTGAAGTGGCGCGTGCCATTGGACGCCCGGCCACCTATCCGACCAAGTACTTTGGCTGT 711821 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGAT 6368 ||| | ||||| ||||| ||||||||| Sbjct 711822 GAATTGGGCGCGCAGACACAGTTTGAT 711848 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 || || || |||||||| || || |||||| | | ||| ||||||| |||| ||| Sbjct 712433 AATGAACGATTCATCGTAAATGGTTCGCATGATGCCAGCAAATTGCAGGATCTACTGGAC 712492 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || || || ||||| | || |||||| ||||||||||| ||||| || || | | Sbjct 712493 GGTTTCATACGCAAATACGTCTTGTGTCCCGAATGCGATAATCCGGAAACTGATTTAACC 712552 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || ||| || | || || || || | |||||||| ||||||| || || Sbjct 712553 GTTTCGGCCAGGAATCAAACAATTTCGCAAGCATGCAAAGCCTGCGGTTTTCACGGTCTC 712612 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCACCT 6605 || | | ||||| | ||||| ||||| |||| ||||||||| || Sbjct 712613 CTCAAAGTCAATCACAAGGTGAACACGTTCATTTTGAAAAATCCTCCAACT 712663 >seq454 Length=983520 Score = 152 bits (168), Expect = 3e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||||||||| ||||||||||| || ||||||||| || ||||| |||| Sbjct 254675 TACCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 254734 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| ||| |||| || | |||||| |||||||| || | ||||||||||| | || Sbjct 254735 ACAAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGG 254794 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || || || || ||| ||||||| || |||||| ||| | Sbjct 254795 GAATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGA 254854 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || ||||| || |||||||| || ||||| || ||||| Sbjct 254855 CCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||||||||| |||||||| ||||| |||||||| || ||||| || ||| Sbjct 254449 CCACCACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 254508 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| | || |||| || || |||||||| || | ||||||||||| | || Sbjct 254509 AAGGTGCGTCCATCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 254568 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || ||||||||||| || |||||| |||||| Sbjct 254569 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAACC 254628 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || ||||| || |||||||| || ||||| || ||||| Sbjct 254629 TCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254675 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 || ||||| || ||||| ||||||||| ||| | || || || || || |||||||| Sbjct 254257 TCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCAAAG 254316 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || | ||||||||||| | ||| | ||||| ||||| ||||| |||||||||| Sbjct 254317 ATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACATTC 254376 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | ||||| |||||||| || || || ||||| || ||||| ||||| ||| Sbjct 254377 TCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTAACG 254436 Query 38307 AATATCTGCATG 38318 || || |||||| Sbjct 254437 AAAATTTGCATG 254448 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||||||||| || || |||||||| || ||||| || || || |||| | Sbjct 253521 ACGTAGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGTCC 253580 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | || || || || || || | || |||||||| | |||| ||||| || Sbjct 253581 ATCTTCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTT 253640 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| || || ||||||||||| || |||||| ||| ||||| || || || Sbjct 253641 GTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACTTCCAAGGTGAT 253700 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || |||||||| || || ||||| || ||||| Sbjct 253701 GGTCTTGCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | |||||||| ||||||||||| || ||||||||| || ||||| |||| Sbjct 253736 TACCACCACGCAAACGCAGGACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 253795 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATAT 38188 ||||| ||| |||| || | |||||| |||||||| || Sbjct 253796 ACAAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAGAT 253835 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | |||||||| ||||||||||| || ||||||||| || ||||| |||| Sbjct 254903 TACCACCGCGCAAACGCAGGACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 254962 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATAT 38188 ||||| ||| |||| || | |||||| |||||||| || Sbjct 254963 ACAAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAGAT 255002 >seq145 Length=1338480 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | ||||| ||| || || | || ||||||||| ||||| || |||| Sbjct 898811 CCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCT 898870 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| ||| | || || | ||||||||| || || |||| ||||||||||||| ||| Sbjct 898871 AAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGA 898930 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||| || ||||||| ||| |||| || || |||||| ||| || Sbjct 898931 ATACCTTCTTTATCTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGACC 898990 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || |||||||| | |||||||||||| || ||||| Sbjct 898991 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037 >seq1310 Length=3030561 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || |||||||||||| ||||| || ||||||||| ||||||||||| | Sbjct 645209 TACCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGG 645150 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| || | || || |||||||| ||||| || || | ||||||||||| | | Sbjct 645149 ACAAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTG 645090 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| ||||| || ||||| | || || || || | Sbjct 645089 GGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGA 645030 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || || || || ||||| |||| ||||| || || |||||||| || Sbjct 645029 CCTCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCATTTT 644978 >seq322 Length=274070 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 56665 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 56606 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 56605 GGTTATATTTAG 56594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334939827602786