Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 468 6e-127
seq925 271 1e-67
>seq1762
Length=809008
Score = 468 bits (518), Expect = 6e-127
Identities = 1244/1886 (66%), Gaps = 42/1886 (2%)
Strand=Plus/Minus
Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900
||||| | |||||||| |||| | | || || || || || | ||| ||||| ||
Sbjct 695480 TTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCG 695421
Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960
||||||| ||| |||| || |||||||| ||| || |||||| ||| | ||
Sbjct 695420 GTTTTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGGT 695361
Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020
||||||| || ||||| | ||||||||||| ||||| ||||| || | || ||||||
Sbjct 695360 TCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGCC 695301
Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATC 62079
|||||||| || ||| | ||| ||||||| |||||||| | | ||| || |
Sbjct 695300 ATTTTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTA---TG 695244
Query 62080 TTCTGGAAGGTTTGTATTC-------TGAATGGATCCACCATCTGCCATAATCCTATTCT 62132
|| ||| ||| | |||| || || || |||| | ||||| ||| |
Sbjct 695243 TTTTGG--GGTATAGATTCAATGTTTTGTATTGAACCACGGCTAGTGATAATTTGATTTT 695186
Query 62133 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 62192
| || ||||||| |||||| || || | | | | | ||| | || || |
Sbjct 695185 TCATATCATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAA 695126
Query 62193 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAG 62252
| ||||| || || || | || | ||||| |||||||| ||| ||||| || | ||
Sbjct 695125 CCTGAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAG 695066
Query 62253 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAAC 62312
| |||||||| |||| ||||| || ||||| || || ||||| ||||| | | ||||
Sbjct 695065 ATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAG 695006
Query 62313 TATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62372
|| | | ||| | | | | ||||| ||||| | ||||||||| || || |
Sbjct 695005 AGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTCCATAGTTCAG 694946
Query 62373 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62432
||| |||| |||||| || || | || ||| |||
Sbjct 694945 TCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTTCAT 694886
Query 62433 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62492
| || ||||| || || || ||||| | ||| || || || ||||| ||||| || |
Sbjct 694885 AAGTTTCGTAAGGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCATAGT 694826
Query 62493 AAATGGTTTCGAAGATCTTCTTATT---TAG--AT-CTTGCGCTTCCAGGCTATCAAATG 62546
|||| ||||| || || | | ||| ||| || |||| ||| ||| || | |
Sbjct 694825 AAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTG---TTC---GCTTTCGTAAG 694772
Query 62547 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62606
|||| | ||| || || ||||||||||| ||||| |||||||||||||| || | ||
Sbjct 694771 GATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGAT 694712
Query 62607 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62666
| || |||||| | | ||||| || | ||||| | || ||||| || |||||||
Sbjct 694711 GCCTGAAATTAGATTTCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTAT 694652
Query 62667 TGAGATTTCT-GACAATTACTTTGACCACATCCTTCAG---TTTGAGAAAATCAAATCGC 62722
| | ||| | | || ||| | || ||||| || ||| |||||| ||
Sbjct 694651 TTAAATTCCGCGTCACGGTCTTAGTG-ACTTCCTTGAGGCGTTT---AAAATCGTATTTT 694596
Query 62723 CCATCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCA 62779
||| | |||||||| || | |||| ||||| | ||| || || ||||||||
Sbjct 694595 TTGTCTGGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTACCTCG 694536
Query 62780 TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 62839
| || | | ||| | | || || ||||| | |||||| || || || || || | |
Sbjct 694535 TCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATA 694476
Query 62840 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 62899
|| ||||||||||||||| | ||||| ||||||||||| | || | || || || ||
Sbjct 694475 TTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTC 694416
Query 62900 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG-ATTTGTA 62958
|| | ||| ||||||||||| | ||| | | | | || || | | | ||| | |
Sbjct 694415 TCCACCTGCGATTCTATAATGGAAAACCAAAGGCTTTGGGCTTTAACTTTCTTATTAGCA 694356
Query 62959 TCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63018
|| || || ||| ||| ||| || || |||||| || || |||||||| | ||
Sbjct 694355 CGTCCTT-CTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAACTTCGTG 694297
Query 63019 CAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTT 63077
| ||| ||||| | || |||||||| || ||||| || | | | ||||| | || |
Sbjct 694296 TAATCCGGGACACTTATGTGGACACATTAATGACCAATCCTCATT-TGCTTCAACACGCT 694238
Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137
||||||| | ||||| ||||| | ||| ||||| |||||| | || ||| ||||| |
Sbjct 694237 TCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTCGATGCTCCTCTT 694178
Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197
|||| ||||| || || | ||| | || | | |||||||| ||||| || |||||||
Sbjct 694177 TTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGT 694118
Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257
|||| || | | |||| || ||||| || || ||||| | || | || |||||
Sbjct 694117 ATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTAT 694058
Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317
| |||| | ||||||||| | | ||||| ||||| ||||| || || | || |
Sbjct 694057 TGAAAACACGCAACATTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAATCGAAG 693998
Query 63318 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377
| || | || || ||| | || || || || || || || |||||| || |
Sbjct 693997 TGCCTTTAGCGCGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAATCA 693938
Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGT 63436
|||| ||| | | | || | | ||||| || || || || | ||| ||||| |
Sbjct 693937 ATGCACATTGATGTGCCGATGTAAATATGCCATCAATGGAGTCGTCGACCATAGTTAA-T 693879
Query 63437 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63496
|||||||| ||| | ||| | | | || | ||| ||| | || || || ||
Sbjct 693878 AGAAAACATGAAGATAATTGTGGCTGTTTGGTAGCGGCAGCAAAGAGTGTTGGTGAGGCA 693819
Query 63497 TGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63556
|| ||||| | ||| ||||| | |||||| || || || || | |||||||||
Sbjct 693818 TGTGTAAAGTAACGTTCTGAAAGCAAATTGTATGTGTCGATTGCCGCATCTATATCCTCA 693759
Query 63557 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63616
||| || || | || |||||||||||||| ||||| || | |||||| || ||
Sbjct 693758 CCATGTATACCAATGGCTACACGCATTAACATATGCTGTGGCCGTTCAACAATTTTACCA 693699
Query 63617 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63676
|| | || | || ||||| ||| | ||| ||||| || ||||| || || ||
Sbjct 693698 TTCAACTTGAGTAAATAGGAACGTTCAAGAGTCTTAAACCCGAAATAATTATAACCGAAA 693639
Query 63677 TCTCGTTCGTAAATAATAACCGAGTT 63702
|| || || |||||||| | |||||
Sbjct 693638 TCACGATCATAAATAATTGCAGAGTT 693613
>seq925
Length=3171676
Score = 271 bits (300), Expect = 1e-67
Identities = 464/667 (70%), Gaps = 7/667 (1%)
Strand=Plus/Minus
Query 32531 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 32590
||||||||| || || || || || || | || | || | ||||||||||||||
Sbjct 2021756 ACAATTCATACCAATTAGGTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTT 2021697
Query 32591 GACCGCGTCTGTTATAATAG--ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGT 32648
|| || || | ||| || || ||| ||| | | || ||| | | ||||||
Sbjct 2021696 AACTGCTTCAGATATGATTTCAATAATAC-GTTCCCTG-CTGGGTTTCTGTATCAAATGT 2021639
Query 32649 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 32708
| ||||||||||| |||||||| || |||| ||||||||| | || || || |||
Sbjct 2021638 TGGAACATCAAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTG 2021579
Query 32709 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 32768
|| || || | || ||||||| ||||| || ||||||||||| || || |||||
Sbjct 2021578 GAGAATGTTAAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTG 2021519
Query 32769 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 32828
|| |||||| || ||||| || || ||||| ||||| | | || ||| | ||
Sbjct 2021518 CCGCTAAAGAATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCA 2021459
Query 32829 --CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885
|| | | | | |||| | |||||||| ||||| || ||| |||||| |||
Sbjct 2021458 GACTTTGAAGAAATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTC 2021399
Query 32886 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945
|| || ||||| || | ||||| | ||| || | || |||| |||||| ||||| ||
Sbjct 2021398 TCAATTGCATTGAACAAATAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAAT 2021339
Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005
| ||||||||||| || || | ||||| || || |||||||| |||||||| || |
Sbjct 2021338 ATGCTATACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGC 2021279
Query 33006 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 33065
||||| || | || |||||| || || |||||| | ||||||||||| || || ||
Sbjct 2021278 GCCTCCGTTACTTGAACTTCTTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCA 2021219
Query 33066 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 33125
|| ||| |||||||| || ||||| || | ||||| | |||||| || |||
Sbjct 2021218 TCCGAGGCGGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGT 2021159
Query 33126 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 33185
|||||||| | ||| || |||| ||| || |||||||| |||||||| || ||
Sbjct 2021158 CGTGCCCAATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCT 2021099
Query 33186 TCTGCCT 33192
|||||||
Sbjct 2021098 TCTGCCT 2021092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633617695757600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |