Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1762 468 6e-127 seq925 271 1e-67 >seq1762 Length=809008 Score = 468 bits (518), Expect = 6e-127 Identities = 1244/1886 (66%), Gaps = 42/1886 (2%) Strand=Plus/Minus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 ||||| | |||||||| |||| | | || || || || || | ||| ||||| || Sbjct 695480 TTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCG 695421 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||||| ||| |||| || |||||||| ||| || |||||| ||| | || Sbjct 695420 GTTTTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGGT 695361 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 ||||||| || ||||| | ||||||||||| ||||| ||||| || | || |||||| Sbjct 695360 TCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGCC 695301 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATC 62079 |||||||| || ||| | ||| ||||||| |||||||| | | ||| || | Sbjct 695300 ATTTTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTA---TG 695244 Query 62080 TTCTGGAAGGTTTGTATTC-------TGAATGGATCCACCATCTGCCATAATCCTATTCT 62132 || ||| ||| | |||| || || || |||| | ||||| ||| | Sbjct 695243 TTTTGG--GGTATAGATTCAATGTTTTGTATTGAACCACGGCTAGTGATAATTTGATTTT 695186 Query 62133 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 62192 | || ||||||| |||||| || || | | | | | ||| | || || | Sbjct 695185 TCATATCATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAA 695126 Query 62193 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAG 62252 | ||||| || || || | || | ||||| |||||||| ||| ||||| || | || Sbjct 695125 CCTGAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAG 695066 Query 62253 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAAC 62312 | |||||||| |||| ||||| || ||||| || || ||||| ||||| | | |||| Sbjct 695065 ATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAG 695006 Query 62313 TATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62372 || | | ||| | | | | ||||| ||||| | ||||||||| || || | Sbjct 695005 AGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTCCATAGTTCAG 694946 Query 62373 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62432 ||| |||| |||||| || || | || ||| ||| Sbjct 694945 TCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTTCAT 694886 Query 62433 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62492 | || ||||| || || || ||||| | ||| || || || ||||| ||||| || | Sbjct 694885 AAGTTTCGTAAGGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCATAGT 694826 Query 62493 AAATGGTTTCGAAGATCTTCTTATT---TAG--AT-CTTGCGCTTCCAGGCTATCAAATG 62546 |||| ||||| || || | | ||| ||| || |||| ||| ||| || | | Sbjct 694825 AAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTG---TTC---GCTTTCGTAAG 694772 Query 62547 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62606 |||| | ||| || || ||||||||||| ||||| |||||||||||||| || | || Sbjct 694771 GATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGAT 694712 Query 62607 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62666 | || |||||| | | ||||| || | ||||| | || ||||| || ||||||| Sbjct 694711 GCCTGAAATTAGATTTCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTAT 694652 Query 62667 TGAGATTTCT-GACAATTACTTTGACCACATCCTTCAG---TTTGAGAAAATCAAATCGC 62722 | | ||| | | || ||| | || ||||| || ||| |||||| || Sbjct 694651 TTAAATTCCGCGTCACGGTCTTAGTG-ACTTCCTTGAGGCGTTT---AAAATCGTATTTT 694596 Query 62723 CCATCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCA 62779 ||| | |||||||| || | |||| ||||| | ||| || || |||||||| Sbjct 694595 TTGTCTGGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTACCTCG 694536 Query 62780 TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 62839 | || | | ||| | | || || ||||| | |||||| || || || || || | | Sbjct 694535 TCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATA 694476 Query 62840 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 62899 || ||||||||||||||| | ||||| ||||||||||| | || | || || || || Sbjct 694475 TTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTC 694416 Query 62900 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG-ATTTGTA 62958 || | ||| ||||||||||| | ||| | | | | || || | | | ||| | | Sbjct 694415 TCCACCTGCGATTCTATAATGGAAAACCAAAGGCTTTGGGCTTTAACTTTCTTATTAGCA 694356 Query 62959 TCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63018 || || || ||| ||| ||| || || |||||| || || |||||||| | || Sbjct 694355 CGTCCTT-CTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAACTTCGTG 694297 Query 63019 CAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTT 63077 | ||| ||||| | || |||||||| || ||||| || | | | ||||| | || | Sbjct 694296 TAATCCGGGACACTTATGTGGACACATTAATGACCAATCCTCATT-TGCTTCAACACGCT 694238 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 ||||||| | ||||| ||||| | ||| ||||| |||||| | || ||| ||||| | Sbjct 694237 TCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTCGATGCTCCTCTT 694178 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 |||| ||||| || || | ||| | || | | |||||||| ||||| || ||||||| Sbjct 694177 TTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGT 694118 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 |||| || | | |||| || ||||| || || ||||| | || | || ||||| Sbjct 694117 ATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTAT 694058 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | |||| | ||||||||| | | ||||| ||||| ||||| || || | || | Sbjct 694057 TGAAAACACGCAACATTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAATCGAAG 693998 Query 63318 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 | || | || || ||| | || || || || || || || |||||| || | Sbjct 693997 TGCCTTTAGCGCGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAATCA 693938 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGT 63436 |||| ||| | | | || | | ||||| || || || || | ||| ||||| | Sbjct 693937 ATGCACATTGATGTGCCGATGTAAATATGCCATCAATGGAGTCGTCGACCATAGTTAA-T 693879 Query 63437 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63496 |||||||| ||| | ||| | | | || | ||| ||| | || || || || Sbjct 693878 AGAAAACATGAAGATAATTGTGGCTGTTTGGTAGCGGCAGCAAAGAGTGTTGGTGAGGCA 693819 Query 63497 TGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63556 || ||||| | ||| ||||| | |||||| || || || || | ||||||||| Sbjct 693818 TGTGTAAAGTAACGTTCTGAAAGCAAATTGTATGTGTCGATTGCCGCATCTATATCCTCA 693759 Query 63557 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63616 ||| || || | || |||||||||||||| ||||| || | |||||| || || Sbjct 693758 CCATGTATACCAATGGCTACACGCATTAACATATGCTGTGGCCGTTCAACAATTTTACCA 693699 Query 63617 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63676 || | || | || ||||| ||| | ||| ||||| || ||||| || || || Sbjct 693698 TTCAACTTGAGTAAATAGGAACGTTCAAGAGTCTTAAACCCGAAATAATTATAACCGAAA 693639 Query 63677 TCTCGTTCGTAAATAATAACCGAGTT 63702 || || || |||||||| | ||||| Sbjct 693638 TCACGATCATAAATAATTGCAGAGTT 693613 >seq925 Length=3171676 Score = 271 bits (300), Expect = 1e-67 Identities = 464/667 (70%), Gaps = 7/667 (1%) Strand=Plus/Minus Query 32531 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 32590 ||||||||| || || || || || || | || | || | |||||||||||||| Sbjct 2021756 ACAATTCATACCAATTAGGTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTT 2021697 Query 32591 GACCGCGTCTGTTATAATAG--ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGT 32648 || || || | ||| || || ||| ||| | | || ||| | | |||||| Sbjct 2021696 AACTGCTTCAGATATGATTTCAATAATAC-GTTCCCTG-CTGGGTTTCTGTATCAAATGT 2021639 Query 32649 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 32708 | ||||||||||| |||||||| || |||| ||||||||| | || || || ||| Sbjct 2021638 TGGAACATCAAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTG 2021579 Query 32709 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 32768 || || || | || ||||||| ||||| || ||||||||||| || || ||||| Sbjct 2021578 GAGAATGTTAAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTG 2021519 Query 32769 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 32828 || |||||| || ||||| || || ||||| ||||| | | || ||| | || Sbjct 2021518 CCGCTAAAGAATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCA 2021459 Query 32829 --CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885 || | | | | |||| | |||||||| ||||| || ||| |||||| ||| Sbjct 2021458 GACTTTGAAGAAATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTC 2021399 Query 32886 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945 || || ||||| || | ||||| | ||| || | || |||| |||||| ||||| || Sbjct 2021398 TCAATTGCATTGAACAAATAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAAT 2021339 Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 | ||||||||||| || || | ||||| || || |||||||| |||||||| || | Sbjct 2021338 ATGCTATACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGC 2021279 Query 33006 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 33065 ||||| || | || |||||| || || |||||| | ||||||||||| || || || Sbjct 2021278 GCCTCCGTTACTTGAACTTCTTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCA 2021219 Query 33066 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 33125 || ||| |||||||| || ||||| || | ||||| | |||||| || ||| Sbjct 2021218 TCCGAGGCGGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGT 2021159 Query 33126 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 33185 |||||||| | ||| || |||| ||| || |||||||| |||||||| || || Sbjct 2021158 CGTGCCCAATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCT 2021099 Query 33186 TCTGCCT 33192 ||||||| Sbjct 2021098 TCTGCCT 2021092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633617695757600