Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1310 147 2e-30 seq454 138 1e-27 >seq1310 Length=3030561 Score = 147 bits (162), Expect = 2e-30 Identities = 163/215 (76%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || |||| ||||| ||||||| | || || ||| | || Sbjct 644980 AATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCATC 645039 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||| ||||| |||| |||| |||| || ||||||||||| || ||||| | Sbjct 645040 TGACACCATCGAAAATGTCA---AAGCCAAAATCCAA-GACAAAGAAGGTATCCCACCAG 645095 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || | || || |||||||||||||| ||||||| ||||||| || ||||| Sbjct 645096 ATCAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGATT 645155 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||||||| ||||| || || || || || || ||| Sbjct 645156 ACAATATCCAAAAGGAGTCAACCCTTCACTTGGTG 645190 >seq454 Length=983520 Score = 138 bits (152), Expect = 1e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||||||||||| ||| ||||||| | ||||| ||| | ||| Sbjct 254447 ATGCAAATTTTCGTTAAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGAGCCATCT 254388 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| ||||| |||||| ||||| ||||| ||||| || || ||| Sbjct 254387 GATACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAAGGTATTCCCCCAGATCAA 254328 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||||||||| || || ||||||| |||||| || || ||||| Sbjct 254327 CAACGTTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGACGCACTTTGTCTGACTACAAC 254268 Query 25179 ATTCAAAAAGAATC 25192 || ||||||||||| Sbjct 254267 ATCCAAAAAGAATC 254254 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||||||| ||| ||||||| | || || || | || Sbjct 254675 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAACCATCA 254616 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| ||||| || ||| ||||| ||||| ||||| || || ||| Sbjct 254615 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 254556 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||||||||| || ||||||||| ||||| || ||| ||||| Sbjct 254555 CAACGTTTGATCTTTGCCGGCAAGCAGCTAGAAGATGGACGCACCTTGTCCGACTACAAC 254496 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || ||||| ||||| || || ||||| || Sbjct 254495 ATCCAAAAGGAATCTACTCTCCATTTGGT 254467 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||||||| ||| ||||||| | || || || | || Sbjct 254903 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTCGAACCATCA 254844 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| | ||| || ||| || || ||||| ||||| || || ||| Sbjct 254843 GATACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 254784 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||||||||||||| | ||||| | |||||| || || ||||| Sbjct 254783 CAACGTTTGATTTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAAC 254724 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || ||||| || || || || ||||| || Sbjct 254723 ATCCAAAAGGAGTCTACCCTTCATTTGGT 254695 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || ||||||| | ||||| || | || Sbjct 253736 ATGCAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCA 253677 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| ||||| || ||| ||||| ||||| || || || || ||| Sbjct 253676 GATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGATCAA 253617 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || || || | ||||||| || || | ||| ||||| Sbjct 253616 CAGCGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATGGACGTACATTATCCGACTACAAC 253557 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||| || || ||||| |||||| | || | ||||| Sbjct 253556 ATCCAAAAGGAATCTACCCTCCATTTGGTGCTACGTCTTCGCGGAGG 253510 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| | || || || |||| || | || ||||| | || Sbjct 255923 AATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATTACTCTGGAGGTGGAACCATC 255864 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || ||||| ||||| || ||| ||||||||||| ||||| || || || Sbjct 255863 TGATACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCA 255804 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| || || || || || ||||||| || || | ||||||||| Sbjct 255803 ACAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGACGTACATTATCCGATTACAA 255744 Query 25178 TAT 25180 || Sbjct 255743 CAT 255741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433318462179890