Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq925 313 3e-80
seq770 129 7e-25
>seq925
Length=3171676
Score = 313 bits (346), Expect = 3e-80
Identities = 496/705 (70%), Gaps = 12/705 (2%)
Strand=Plus/Minus
Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985
||| ||||| ||||| || || | ||||| | | ||||||||| || | || |||
Sbjct 2021792 ATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAGGTTTAC 2021733
Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045
||||| ||||| || ||||| |||| || ||| ||| ||||| | |||||| ||
Sbjct 2021732 AGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGATTTCAAT 2021673
Query 93046 --TACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103
||| | | ||| |||| |||| | || | | |||| || ||||| || ||
Sbjct 2021672 AATACGTTCCCTGCTGG--GTTTCTGTATCAAATGTTGGAACATCAAACACGCGAAATCA 2021615
Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163
||||||||| ||||| ||||| |||||||||||| ||||||||| || || | |
Sbjct 2021614 CAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCATTAAA 2021555
Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223
|| |||||||| |||||||| ||||| |||||||| || ||| ||||| ||||| ||
Sbjct 2021554 CCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCTTCAACA 2021495
Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA--TCCATTTTA 93281
|| |||||||| | |||||||| |||| ||||| || || || || |||| |
Sbjct 2021494 GCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTT--TGAAGAAATCCAAGCCA 2021437
Query 93282 AAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAAT 93341
|||||||| || || ||||| | ||| | || || || || || || | || |
Sbjct 2021436 GCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGCATTGAACAAATAGT 2021377
Query 93342 CTCGCTCGT--CCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399
||| | | ||| || || ||||| || ||||| | ||||||||| || ||
Sbjct 2021376 CTCTTTGTTTGCCG--TCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAGTG 2021319
Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459
||||| ||||| || ||||| || ||||||||||| | || ||||| | || |||||
Sbjct 2021318 CACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACTTC 2021259
Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519
|||| || | ||||| | ||||||||| || |||||||| || || |||||||| ||
Sbjct 2021258 TTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGGC 2021199
Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579
|||| ||| | ||||||| | || | || |||| ||||||| || |||
Sbjct 2021198 TAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCGTGCCCAATCATCTAAATC 2021139
Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
|| || | ||| || ||||| || |||||||| || ||||||||
Sbjct 2021138 CTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCTTCTGC 2021094
>seq770
Length=6430753
Score = 129 bits (142), Expect = 7e-25
Identities = 82/88 (93%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 4854618 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 4854559
Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350
||||||||||||||||||||||||||||
Sbjct 4854558 GTGGGTTCGAACCCCACACCTGACAAAT 4854531
Score = 127 bits (140), Expect = 2e-24
Identities = 81/87 (93%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 4908367 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 4908426
Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349
|||||||||||||||||||||||||||
Sbjct 4908427 GTGGGTTCGAACCCCACACCTGACAAA 4908453
Score = 125 bits (138), Expect = 8e-24
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319
|| |||||||||||||||| |||||||||||||||||||||| |||||||||| |||
Sbjct 4852792 TATAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGG 4852733
Query 126320 AGCGTGGGTTCGAACCCCACACCTGACA 126347
||||||||||||||||||||||||||||
Sbjct 4852732 AGCGTGGGTTCGAACCCCACACCTGACA 4852705
Score = 123 bits (136), Expect = 3e-23
Identities = 79/85 (93%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 4902548 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 4902607
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
|||||||||||||||||||||||||
Sbjct 4902608 GTGGGTTCGAACCCCACACCTGACA 4902632
Score = 123 bits (136), Expect = 3e-23
Identities = 79/85 (93%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 4904218 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 4904277
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
|||||||||||||||||||||||||
Sbjct 4904278 GTGGGTTCGAACCCCACACCTGACA 4904302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556848228867440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |