Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1762 275 5e-69 seq454 161 8e-35 seq1310 147 2e-30 seq145 127 2e-24 seq925 82.4 6e-11 >seq1762 Length=809008 Score = 275 bits (304), Expect = 5e-69 Identities = 748/1120 (67%), Gaps = 45/1120 (4%) Strand=Plus/Minus Query 128771 TTTGCGACTT--GTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATA 128828 |||||| ||| ||| ||||| |||| || || | || || ||||| ||||||||||| Sbjct 695490 TTTGCGGCTTTTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATA 695431 Query 128829 GTACATGCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGC 128888 |||||||| ||||| ||||| ||||||| | | || || | || || ||| Sbjct 695430 ATACATGCCGGTTTTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGT-AAGTTTGC 695372 Query 128889 -GTAGGTGGGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGC 128947 ||| | |||| | |||||||| ||||||||||| || ||||||| || | Sbjct 695371 CGTAATTAGGTTCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCAC 695312 Query 128948 GATCGGCAGCCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCT 129007 |||| |||||||| || || |||| || || ||||| || ||||| || || | Sbjct 695311 GATCAGCAGCCATTTTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTT 695252 Query 129008 CTCTCACGTGTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTT 129067 | | | || || ||||| ||||||||| || | || | | | ||||||| Sbjct 695251 CGCGTATGTTTTGGGGTATAGATTCAATGTTTTGTATTGAACCACGGCTAGTGATAATTT 695192 Query 129068 TGTTTCGCATCTGTTCGTTGTACAA-----ATTCAGTTTGATCAAATCGTCGGTCAAGTA 129122 ||| ||| | || | | || ||||||| | ||| || ||| | Sbjct 695191 GATTTTTCATATCATCATCCCATAAGCCCAATTCAGTAAGGTCA---CGCAA--CAAATG 695137 Query 129123 TTTGTTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAA 129182 | ||||| || ||||| ||||| | | || || ||| ||||| ||| |||| | Sbjct 695136 ATGGTTTACAACCTGAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTA 695077 Query 129183 CGGCTCAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGC 129242 ||||||||| |||||||| || || | |||||| ||||||| ||||| |||||| || Sbjct 695076 CGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGC 695017 Query 129243 CAC--GCAAAGCGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAG 129300 | | |||| |||| || | ||| || | ||||| | || ||| || | ||||| Sbjct 695016 AAGTAGTAAAG--AGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAA 694959 Query 129301 TCCCACATCGATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACC----CAAACT 129356 | ||| | || || | | || ||||| || || || || ||||| | ||| Sbjct 694958 TTCCATAGTTCAGTCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACC 694899 Query 129357 GGCGGGACTGGAAAAGTAGGAATCGTGCACGCCGTAAGCTTTT-GCCAATTCGCAACTCG 129415 || | || | |||| |||| | ||| || ||| ||||||||||| || | Sbjct 694898 GGTGAACCTTCATAAGTT----TCGTA-AGGCCCAAATTTTTCAGCCAATTCGCAGCTGG 694844 Query 129416 CTTCCAATGCGCCAAAATAAATTGTTTCGGCAAT-TTTGGTG-TTCAACACTTTGGCCTG 129473 |||| || || ||| | ||||||||||| ||| |||| || ||||| | || || Sbjct 694843 CTTCTAAAGCACCATAGTAAATTGTTTCA--AATATTTGTTGATTCAATAGGAATGCTTG 694786 Query 129474 GTCGCTTTCGTACGGCATA-CGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCA 129532 ||||||||||| || ||| |||| | | |||| ||| || |||||||| | ||| | Sbjct 694785 TTCGCTTTCGTAAGG-ATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAA 694727 Query 129533 CACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCCGACA-ACAAGGGATAGTAGTTG 129591 |||||| || ||||| | ||| ||||| | || | || ||| ||||||| ||| Sbjct 694726 TACCGATCGGACGATGCCTGAAATTAGATTTCT-TGGCTTCAGGCAATGGATAGTGGTTT 694668 Query 129592 ATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCA 129651 || || || ||||| ||||||||| ||| | || || || | || | || | Sbjct 694667 ATATCAATGATTTTATTTAAATTCCGCGTCACGGTCTTAGTGACTTCCTTGAGGCGTTTA 694608 Query 129652 AAATTGTACTCGCCTACATC-GATGTCGACAAATTGATTGACACAAATCGAGGCCAAATT 129710 |||| ||| | | || | ||| ||||| ||||| |||||| || ||||| Sbjct 694607 AAATCGTATT---TTTTGTCTGGTGT-AACAAACATATTGAGGGCAATCGATGCTAAATT 694552 Query 129711 GCAGACGGCACTTTCGTTTTTGTCACTG--TACTCGACAATTTCGGCGCACAAATTACTA 129768 ||| || || ||| | | ||| ||||| |||||||| | ||| |||||||| Sbjct 694551 GCATACAGCTACCTCG--TCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTG 694494 Query 129769 TTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATC 129828 |||||| ||||| | || || ||||||||| || | || |||||||| || || | | Sbjct 694493 CATTTAATTGTGCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAAC 694434 Query 129829 ATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGG 129868 || ||||| |||||||| || || |||| ||| | ||||| Sbjct 694433 ATATACGGTGTGCCCGTCTCCACCTGCGATTCTATAATGG 694394 >seq454 Length=983520 Score = 161 bits (178), Expect = 8e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| || || ||||| ||||| ||||| | || || ||| | | Sbjct 254675 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAACCATCA 254616 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || || |||||||| |||||||| || |||||| Sbjct 254615 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 254556 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||||||||| ||| |||| ||| |||||| | ||||| |||||| Sbjct 254555 CAACGTTTGATCTTTGCCGGCAAGCAGCTAGAAGATGGACGCACCTTGTCCGACTACAAC 254496 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| ||||| || | ||||| || ||||| ||||| || || Sbjct 254495 ATCCAAAAGGAATCTACTCTCCATTTGGTCTTGCGTTTGCGTGGTGG 254449 Score = 156 bits (172), Expect = 4e-33 Identities = 151/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||||||||| ||||| ||||| |||| | ||||| || | | Sbjct 254447 ATGCAAATTTTCGTTAAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGAGCCATCT 254388 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||||| ||||||||||| |||||||| || |||||| Sbjct 254387 GATACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAAGGTATTCCCCCAGATCAA 254328 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||||||||| ||||| || ||| ||||| | || || |||||| Sbjct 254327 CAACGTTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGACGCACTTTGTCTGACTACAAC 254268 Query 22399 ATTCAAAAAGAATC 22412 || ||||||||||| Sbjct 254267 ATCCAAAAAGAATC 254254 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| || || ||||| ||||| ||||| | || || ||| | | Sbjct 254903 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTCGAACCATCA 254844 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || || ||||| ||||| |||||||| || |||||| Sbjct 254843 GATACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 254784 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || |||||||||||||| | || || ||||| | || || |||||| Sbjct 254783 CAACGTTTGATTTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAAC 254724 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || ||| | ||||| || ||||| |||||||| ||| Sbjct 254723 ATCCAAAAGGAGTCTACCCTTCATTTGGTATTGCGTTTGCGCGGTGGT 254676 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||||| || || || || |||| | ||||| ||| | | Sbjct 253736 ATGCAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCA 253677 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || ||||||||||| ||||| || || |||||| Sbjct 253676 GATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGATCAA 253617 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || ||| | || ||| || || | ||||| |||||| Sbjct 253616 CAGCGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATGGACGTACATTATCCGACTACAAC 253557 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| ||||| ||| | ||||| || | || | |||||||| Sbjct 253556 ATCCAAAAGGAATCTACCCTCCATTTGGTGCTACGTCTTCGCGGAGG 253510 Score = 98.7 bits (108), Expect = 8e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || |||| || || || | ||||| || |||||| | | Sbjct 255922 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATTACTCTGGAGGTGGAACCATCT 255863 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || |||||||| || |||||||| || |||||| Sbjct 255862 GATACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 255803 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || ||||| || ||| || || | |||||||||||| Sbjct 255802 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGACGTACATTATCCGATTACAAC 255743 Query 22399 AT 22400 || Sbjct 255742 AT 255741 >seq1310 Length=3030561 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| |||||||| ||||| | || ||||| || ||||| | || || || | Sbjct 644978 AAAATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCA 645037 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || ||||| ||||| |||||||| || ||||| ||||| ||| Sbjct 645038 TCTGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGAT 645097 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||| | || || ||||||||||| || || ||| ||||| | ||||||||| Sbjct 645098 CAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGATTAC 645157 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || || ||| | || || || ||||| |||| || ||| Sbjct 645158 AATATCCAAAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTGCGTGGTGGT 645208 >seq145 Length=1338480 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || ||||| || |||||||||| || ||| || | Sbjct 899037 ATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCG 898978 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || |||||||||||| || || |||||||| ||||||||| Sbjct 898977 GATACTATCGAGCATGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCCCCCGATCAA 898918 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || || ||||| | || ||| || || | | || || || Sbjct 898917 CAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCGTACTTTAGCTGACTATAAT 898858 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || ||||| || || ||| |||| ||||| |||| Sbjct 898857 ATCCAAAAGGAGTCTACCTTACACTTAGTGCTGCG 898823 >seq925 Length=3171676 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 117059 ACGCATGATCGCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCAT 117118 ||| || || || || ||| ||| |||||||| |||||| ||||||||||| | || Sbjct 2021474 ACGTATAATTGCATTTGCCGCTGTTGAAGGCATATTCTTTAGCGGCAGTTTTGCATCAAT 2021533 Query 117119 ATTTTTTATCAAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATC 117178 |||| | |||| ||| |||||||||| |||| || ||| || || || || Sbjct 2021534 CTTTTGGCTTAAGAAACGTGGTTTAATGCCGGGCTTAACATTCTCCAATGAGTTGATCTC 2021593 Query 117179 GCGTGACGAAGGTTTACACACCGATTTTGCGTG 117211 |||||||| |||||||| ||||| ||||| Sbjct 2021594 ACGTGACGAGGGTTTACATTGTGATTTCGCGTG 2021626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419718761524390