Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 275 5e-69
seq454 161 8e-35
seq1310 147 2e-30
seq145 127 2e-24
seq925 82.4 6e-11
>seq1762
Length=809008
Score = 275 bits (304), Expect = 5e-69
Identities = 748/1120 (67%), Gaps = 45/1120 (4%)
Strand=Plus/Minus
Query 128771 TTTGCGACTT--GTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATA 128828
|||||| ||| ||| ||||| |||| || || | || || ||||| |||||||||||
Sbjct 695490 TTTGCGGCTTTTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATA 695431
Query 128829 GTACATGCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGC 128888
|||||||| ||||| ||||| ||||||| | | || || | || || |||
Sbjct 695430 ATACATGCCGGTTTTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGT-AAGTTTGC 695372
Query 128889 -GTAGGTGGGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGC 128947
||| | |||| | |||||||| ||||||||||| || ||||||| || |
Sbjct 695371 CGTAATTAGGTTCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCAC 695312
Query 128948 GATCGGCAGCCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCT 129007
|||| |||||||| || || |||| || || ||||| || ||||| || || |
Sbjct 695311 GATCAGCAGCCATTTTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTT 695252
Query 129008 CTCTCACGTGTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTT 129067
| | | || || ||||| ||||||||| || | || | | | |||||||
Sbjct 695251 CGCGTATGTTTTGGGGTATAGATTCAATGTTTTGTATTGAACCACGGCTAGTGATAATTT 695192
Query 129068 TGTTTCGCATCTGTTCGTTGTACAA-----ATTCAGTTTGATCAAATCGTCGGTCAAGTA 129122
||| ||| | || | | || ||||||| | ||| || ||| |
Sbjct 695191 GATTTTTCATATCATCATCCCATAAGCCCAATTCAGTAAGGTCA---CGCAA--CAAATG 695137
Query 129123 TTTGTTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAA 129182
| ||||| || ||||| ||||| | | || || ||| ||||| ||| |||| |
Sbjct 695136 ATGGTTTACAACCTGAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTA 695077
Query 129183 CGGCTCAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGC 129242
||||||||| |||||||| || || | |||||| ||||||| ||||| |||||| ||
Sbjct 695076 CGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGC 695017
Query 129243 CAC--GCAAAGCGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAG 129300
| | |||| |||| || | ||| || | ||||| | || ||| || | |||||
Sbjct 695016 AAGTAGTAAAG--AGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAA 694959
Query 129301 TCCCACATCGATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACC----CAAACT 129356
| ||| | || || | | || ||||| || || || || ||||| | |||
Sbjct 694958 TTCCATAGTTCAGTCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACC 694899
Query 129357 GGCGGGACTGGAAAAGTAGGAATCGTGCACGCCGTAAGCTTTT-GCCAATTCGCAACTCG 129415
|| | || | |||| |||| | ||| || ||| ||||||||||| || |
Sbjct 694898 GGTGAACCTTCATAAGTT----TCGTA-AGGCCCAAATTTTTCAGCCAATTCGCAGCTGG 694844
Query 129416 CTTCCAATGCGCCAAAATAAATTGTTTCGGCAAT-TTTGGTG-TTCAACACTTTGGCCTG 129473
|||| || || ||| | ||||||||||| ||| |||| || ||||| | || ||
Sbjct 694843 CTTCTAAAGCACCATAGTAAATTGTTTCA--AATATTTGTTGATTCAATAGGAATGCTTG 694786
Query 129474 GTCGCTTTCGTACGGCATA-CGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCA 129532
||||||||||| || ||| |||| | | |||| ||| || |||||||| | ||| |
Sbjct 694785 TTCGCTTTCGTAAGG-ATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAA 694727
Query 129533 CACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCCGACA-ACAAGGGATAGTAGTTG 129591
|||||| || ||||| | ||| ||||| | || | || ||| ||||||| |||
Sbjct 694726 TACCGATCGGACGATGCCTGAAATTAGATTTCT-TGGCTTCAGGCAATGGATAGTGGTTT 694668
Query 129592 ATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCA 129651
|| || || ||||| ||||||||| ||| | || || || | || | || |
Sbjct 694667 ATATCAATGATTTTATTTAAATTCCGCGTCACGGTCTTAGTGACTTCCTTGAGGCGTTTA 694608
Query 129652 AAATTGTACTCGCCTACATC-GATGTCGACAAATTGATTGACACAAATCGAGGCCAAATT 129710
|||| ||| | | || | ||| ||||| ||||| |||||| || |||||
Sbjct 694607 AAATCGTATT---TTTTGTCTGGTGT-AACAAACATATTGAGGGCAATCGATGCTAAATT 694552
Query 129711 GCAGACGGCACTTTCGTTTTTGTCACTG--TACTCGACAATTTCGGCGCACAAATTACTA 129768
||| || || ||| | | ||| ||||| |||||||| | ||| ||||||||
Sbjct 694551 GCATACAGCTACCTCG--TCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTG 694494
Query 129769 TTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATC 129828
|||||| ||||| | || || ||||||||| || | || |||||||| || || | |
Sbjct 694493 CATTTAATTGTGCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAAC 694434
Query 129829 ATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGG 129868
|| ||||| |||||||| || || |||| ||| | |||||
Sbjct 694433 ATATACGGTGTGCCCGTCTCCACCTGCGATTCTATAATGG 694394
>seq454
Length=983520
Score = 161 bits (178), Expect = 8e-35
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || ||||| || || ||||| ||||| ||||| | || || ||| | |
Sbjct 254675 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAACCATCA 254616
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || || | || || || || |||||||| |||||||| || ||||||
Sbjct 254615 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 254556
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||| | || ||||||||||| ||| |||| ||| |||||| | ||||| ||||||
Sbjct 254555 CAACGTTTGATCTTTGCCGGCAAGCAGCTAGAAGATGGACGCACCTTGTCCGACTACAAC 254496
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| ||||| ||||| || | ||||| || ||||| ||||| || ||
Sbjct 254495 ATCCAAAAGGAATCTACTCTCCATTTGGTCTTGCGTTTGCGTGGTGG 254449
Score = 156 bits (172), Expect = 4e-33
Identities = 151/194 (78%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||||||||| ||||| ||||| |||| | ||||| || | |
Sbjct 254447 ATGCAAATTTTCGTTAAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGAGCCATCT 254388
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || || | || ||||| ||||||||||| |||||||| || ||||||
Sbjct 254387 GATACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAAGGTATTCCCCCAGATCAA 254328
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||| | || ||||||||||| ||||| || ||| ||||| | || || ||||||
Sbjct 254327 CAACGTTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGACGCACTTTGTCTGACTACAAC 254268
Query 22399 ATTCAAAAAGAATC 22412
|| |||||||||||
Sbjct 254267 ATCCAAAAAGAATC 254254
Score = 154 bits (170), Expect = 1e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || ||||| || || ||||| ||||| ||||| | || || ||| | |
Sbjct 254903 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTCGAACCATCA 254844
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || || |||| || || ||||| ||||| |||||||| || ||||||
Sbjct 254843 GATACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 254784
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||| | || |||||||||||||| | || || ||||| | || || ||||||
Sbjct 254783 CAACGTTTGATTTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAAC 254724
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| ||||| || || ||| | ||||| || ||||| |||||||| |||
Sbjct 254723 ATCCAAAAGGAGTCTACCCTTCATTTGGTATTGCGTTTGCGCGGTGGT 254676
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| ||||| || || || || |||| | ||||| ||| | |
Sbjct 253736 ATGCAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCA 253677
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || || | || || || ||||||||||| ||||| || || ||||||
Sbjct 253676 GATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGATCAA 253617
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||| | || || || || || ||| | || ||| || || | ||||| ||||||
Sbjct 253616 CAGCGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATGGACGTACATTATCCGACTACAAC 253557
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| ||||| ||||| ||| | ||||| || | || | ||||||||
Sbjct 253556 ATCCAAAAGGAATCTACCCTCCATTTGGTGCTACGTCTTCGCGGAGG 253510
Score = 98.7 bits (108), Expect = 8e-16
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || |||| || || || | ||||| || |||||| | |
Sbjct 255922 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATTACTCTGGAGGTGGAACCATCT 255863
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || || | || || || |||||||| || |||||||| || ||||||
Sbjct 255862 GATACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 255803
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||| | || || || || || ||||| || ||| || || | ||||||||||||
Sbjct 255802 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGACGTACATTATCCGATTACAAC 255743
Query 22399 AT 22400
||
Sbjct 255742 AT 255741
>seq1310
Length=3030561
Score = 147 bits (162), Expect = 2e-30
Identities = 171/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| |||||||| ||||| | || ||||| || ||||| | || || || |
Sbjct 644978 AAAATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCA 645037
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || ||| | || || ||||| ||||| |||||||| || ||||| ||||| |||
Sbjct 645038 TCTGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGAT 645097
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
||||||||| | || || ||||||||||| || || ||| ||||| | |||||||||
Sbjct 645098 CAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGATTAC 645157
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || ||||| || || ||| | || || || ||||| |||| || |||
Sbjct 645158 AATATCCAAAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTGCGTGGTGGT 645208
>seq145
Length=1338480
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| || ||||| | || ||||| || |||||||||| || ||| || |
Sbjct 899037 ATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCG 898978
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | || |||||||||||| || || |||||||| |||||||||
Sbjct 898977 GATACTATCGAGCATGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCCCCCGATCAA 898918
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||| | || || || || ||||| | || ||| || || | | || || ||
Sbjct 898917 CAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCGTACTTTAGCTGACTATAAT 898858
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433
|| ||||| || || ||| |||| ||||| ||||
Sbjct 898857 ATCCAAAAGGAGTCTACCTTACACTTAGTGCTGCG 898823
>seq925
Length=3171676
Score = 82.4 bits (90), Expect = 6e-11
Identities = 110/153 (72%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 117059 ACGCATGATCGCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCAT 117118
||| || || || || ||| ||| |||||||| |||||| ||||||||||| | ||
Sbjct 2021474 ACGTATAATTGCATTTGCCGCTGTTGAAGGCATATTCTTTAGCGGCAGTTTTGCATCAAT 2021533
Query 117119 ATTTTTTATCAAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATC 117178
|||| | |||| ||| |||||||||| |||| || ||| || || || ||
Sbjct 2021534 CTTTTGGCTTAAGAAACGTGGTTTAATGCCGGGCTTAACATTCTCCAATGAGTTGATCTC 2021593
Query 117179 GCGTGACGAAGGTTTACACACCGATTTTGCGTG 117211
|||||||| |||||||| ||||| |||||
Sbjct 2021594 ACGTGACGAGGGTTTACATTGTGATTTCGCGTG 2021626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419718761524390
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