Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1587 96.9 7e-15 seq1 96.9 7e-15 seq1146 93.3 9e-14 seq1696 91.5 3e-13 seq145 87.8 4e-12 seq1013 84.2 4e-11 >seq1587 Length=2220736 Score = 96.9 bits (106), Expect = 7e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 936245 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 936186 Query 142561 AGCCCCACATCGGGCAGA 142578 |||||||| | |||| || Sbjct 936185 AGCCCCACGTTGGGCGGA 936168 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 941699 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 941640 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 941639 CCCCACGTTGGGC 941627 >seq1 Length=10144477 Score = 96.9 bits (106), Expect = 7e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 6179502 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 6179443 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| ||||| Sbjct 6179442 CCCACGTTGGGCGGAAGT 6179425 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 6178718 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 6178659 Query 142564 CCCACATCGGGCAGAA 142579 ||||| | |||| ||| Sbjct 6178658 CCCACGTTGGGCGGAA 6178643 Score = 93.3 bits (102), Expect = 9e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 7070303 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 7070362 Query 142564 CCCACATCGGGCAGAAGTC 142582 ||||| | |||| ||||| Sbjct 7070363 CCCACGTTGGGCGCAAGTC 7070381 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 6179104 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 6179045 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 6179044 CCCACGTTGGGC 6179033 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 7068387 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 7068446 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 7068447 CCCACGTTGGGC 7068458 >seq1146 Length=4288032 Score = 93.3 bits (102), Expect = 9e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 3134065 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3134124 Query 142564 CCCACATCGGGCAGAAGTC 142582 ||||| | |||| ||||| Sbjct 3134125 CCCACGTTGGGCGAAAGTC 3134143 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 3240150 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 3240091 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 3240090 GCCCCACGTTGGGC 3240077 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 3236797 ATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 3236738 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 3236737 AGCCCCACGTTGGGC 3236723 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 3248013 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3247954 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 3247953 CCCCACGTTGGGC 3247941 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 3324622 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3324563 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 3324562 CCCCACGTTGGGC 3324550 >seq1696 Length=7281330 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 6572901 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 6572842 Query 142564 CCCACATCGGGCAGAAG 142580 ||||| | |||| |||| Sbjct 6572841 CCCACGTTGGGC-GAAG 6572826 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| | Sbjct 782935 GTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATC 782876 Query 142113 CCCGCCAGAGACGC 142126 ||||| || || || Sbjct 782875 CCCGCAAGGGATGC 782862 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 783229 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 783170 Query 142112 CCCCGCCAGAGA 142123 |||||| || || Sbjct 783169 CCCCGCAAGGGA 783158 >seq145 Length=1338480 Score = 87.8 bits (96), Expect = 4e-12 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 || ||||| ||||| ||||||| ||| | ||||| |||| || |||||||| || | Sbjct 24909 AAAGTCGCACAGTTGTCTGGTTCTGTTGCGGAAATGTCTGCTTATCATCACGGCGAAATG 24968 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 || || | | ||||||| ||||||| ||||||| || || || || || Sbjct 24969 TCGCTACAAGCTACCATTGTTAATTTGGCACAAAACTATGTCGGTTCAAATAATATTAAT 25028 Query 218776 TTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCT 218835 || || || |||||| || ||| |||||||| ||||||||||||| |||| Sbjct 25029 TTATTGGAGCCTCGCGGTCAATTCGGTACTCGTCTACAGGGTGGAAAGGATTGTGCGAGC 25088 Query 218836 GCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGAT 218895 || | ||||| || ||| |||| || | ||| | | | ||| ||| |||||| Sbjct 25089 GCTCGTTATATTTTCACATTAATGTCACCGTTAACGAGACTCATATTCCATCCAGCCGAT 25148 Query 218896 GAT 218898 ||| Sbjct 25149 GAT 25151 >seq1013 Length=4954033 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142057 CTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 1023497 CTTTGGCGCAGCGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATCCCCG 1023556 Query 142117 CCAG 142120 | || Sbjct 1023557 CAAG 1023560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027813016498846