Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq454 185 2e-41 seq1310 168 1e-36 seq145 147 4e-30 >seq454 Length=983520 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||||||||| || | ||||| || || || || || ||||||||||| || ||||| Sbjct 253510 CCTCCGCGAAGACGTAGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAT 253569 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | |||||||| | |||||| || ||||| || | | ||||| || || || Sbjct 253570 AATGTACGTCCATCTTCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGG 253629 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||| ||||| ||||| || ||||||||| |||| || ||| ||| Sbjct 253630 ATACCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACT 253689 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || ||||| | ||||| ||||| || ||||| Sbjct 253690 TCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736 Score = 176 bits (194), Expect = 8e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| ||||| || || || || || ||||||||||| || ||||| | || | ||| Sbjct 254461 CGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCA 254520 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||||| |||||| ||||| || || | | |||||| || || ||||| ||||||||| Sbjct 254521 TCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTG 254580 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || || ||||| ||||| || ||||||||| |||| || ||| || ||||| |||||| Sbjct 254581 TCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAACCTCCAAAGTGATG 254640 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || | |||||| ||||| || ||||| Sbjct 254641 GTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254675 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| | ||||||||||| || || || ||||| ||||||||||| || || || Sbjct 254677 CCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 254736 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| | || || ||||| || || | | |||||| || || ||| Sbjct 254737 AAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGA 254796 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||| ||||| |||||||| ||||||||| |||| || ||| || Sbjct 254797 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGACC 254856 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||||||||| || || | |||||| ||||| || ||||| Sbjct 254857 TCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903 Score = 147 bits (162), Expect = 4e-30 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 68268 GACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCG 68327 || |||||||||||||| || || || | || | |||||||| |||||||| ||||| Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313 Query 68328 AATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACG 68387 || || | | |||||| || || ||||| |||||||||||||| || || ||||| || Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373 Query 68388 GCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTG 68447 ||| ||||| || | || || |||||||||||||||||||| || || | || || Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433 Query 68448 ACGAATATCTGCAT 68461 ||||| || ||||| Sbjct 254434 ACGAAAATTTGCAT 254447 >seq1310 Length=3030561 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||||||| || || ||||| |||||||| || |||||||| Sbjct 645207 CCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGAC 645148 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| || || || |||||||| || | | |||||| || ||||| Sbjct 645147 AAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 645088 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||| || || || ||||| ||||||||||| | || || || Sbjct 645087 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACC 645028 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||| |||||||| || || || || || ||||| || ||||||||| || Sbjct 645027 TCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCATTTTG 644977 >seq145 Length=1338480 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || | ||| |||| || ||||||| || ||||| |||||||| ||||| || | Sbjct 898810 TCCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGC 898869 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | || | |||||||| | || || || ||||| || | | |||||| ||||| || Sbjct 898870 TAAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGG 898929 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| ||||| || |||||||| |||||||| || |||||| || || | | ||| || Sbjct 898930 AATACCTTCTTTATCTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGAC 898989 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||||| || ||||||||||| || ||||| || |||||| Sbjct 898990 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCATT 899038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921601594374320