Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq454 95.1 9e-15 >seq454 Length=983520 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || |||| || || || ||||||||||| || |||| ||| | || Sbjct 254675 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAACCATCA 254616 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || || || || ||| | ||| | | ||| Sbjct 254615 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 254556 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | |||||||| ||||| || ||||||||| | || || |||| ||||| Sbjct 254555 CAACGTTTGATCTTTGCCGGCAAGCAGCTAGAAGATGGACGCACCTTGTCCGACTACAAC 254496 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||||||||| ||| |||| || ||||| || || || Sbjct 254495 ATCCAAAAGGAATCTACTCTCCATTTGGTCTTGCGTTTGCGTGGTGG 254449 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || |||| || || || ||||||||||| || |||| ||| | || Sbjct 254903 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTCGAACCATCA 254844 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || ||||| || ||| | || | | ||| Sbjct 254843 GATACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 254784 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | || ||||| ||||||||||| ||||| | ||| || | || ||||| Sbjct 254783 CAACGTTTGATTTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAAC 254724 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||| ||||| |||||| ||||||| ||||| || || || Sbjct 254723 ATCCAAAAGGAGTCTACCCTTCATTTGGTATTGCGTTTGCGCGGTGG 254677 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || |||| || || |||||||| ||||| ||| ||||| ||| | || Sbjct 253736 ATGCAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCA 253677 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || || || || || ||| | ||| | | ||| Sbjct 253676 GATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGATCAA 253617 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | | || || ||||| || || || |||||| | || | |||| ||||| Sbjct 253616 CAGCGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATGGACGTACATTATCCGACTACAAC 253557 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||||||||| || ||| |||| ||||| | || ||||| Sbjct 253556 ATCCAAAAGGAATCTACCCTCCATTTGGTGCTACGTCTTCGCGGAGG 253510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358116917449324