Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq1310 127 2e-24
seq454 100 2e-16
seq924 84.2 2e-11
>seq1310
Length=3030561
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | ||| || || || | || || || ||||| || |||||||||
Sbjct 645210 ATACCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCG 645151
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| ||| |||||| | |||||| || ||| |||| | ||| ||||| || ||
Sbjct 645150 GACAAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGT 645091
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||||||||| || || ||| | | ||| | |||||| | | |||
Sbjct 645090 GGGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCG 645031
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || || ||||| ||||| ||||||||||||||
Sbjct 645030 ACCTCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981
>seq454
Length=983520
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| | | ||| || ||||| | |||||||| ||||| |||||||| |||
Sbjct 254446 ATGCCACCACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCG 254505
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || |||||| || || || || || |||| | ||| ||||| || |||
Sbjct 254506 GACAAGGTGCGTCCATCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGA 254565
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| ||||| ||||| || | | || | ||| || | | |||
Sbjct 254566 GGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCA 254625
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | ||||||||||||| || || || || || |||||
Sbjct 254626 ACCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254675
Score = 95.1 bits (104), Expect = 1e-14
Identities = 138/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 114189 GATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCG 114248
||||||||||| |||||||| || || ||| || |||||| | || || || ||
Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313
Query 114249 TAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC 114308
|||| | ||| ||||| || || ||||| ||||| ||||| || || || |
Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373
Query 114309 TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTT 114368
| |||| ||| || | | || || |||| ||| | ||||||||||||| ||||||
Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433
Query 114369 ACAAAAATCTGCATG 114383
|| ||||| ||||||
Sbjct 254434 ACGAAAATTTGCATG 254448
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || | | ||| || ||||| | ||||| || ||||| |||||||| ||
Sbjct 254674 ATACCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCA 254733
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| || ||||| |||||||| || || | || | ||| ||||| || ||
Sbjct 254734 GACAAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGG 254793
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| || || ||||| || | | || | ||| || | | ||||
Sbjct 254794 GGAATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCG 254853
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | ||||||||||||| || || || || || |||||
Sbjct 254854 ACCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903
>seq924
Length=13938904
Score = 84.2 bits (92), Expect = 2e-11
Identities = 113/154 (73%), Gaps = 10/154 (6%)
Strand=Plus/Plus
Query 43834 GCTTCAATGTTACCTAAATCGCCGACGTGACGCTCTA--TCGAATTGGGTGCGCCATG-- 43889
|||||||| || ||||||||||| | ||||| | | ||| || ||||| |||||
Sbjct 10440638 GCTTCAATATTGCCTAAATCGCCCAAATGACGGTTCAAATCGGAT--GGTGCACCATGCG 10440695
Query 43890 -ATTGCGACCAAAAGGATTGAAATGTTCGCCGGCGGACGTACATCCGTTACTGGTGTCGC 43948
||| | || |||| |||||||| ||| || || || || ||||| || |||| |
Sbjct 10440696 AATTTC---CATAAGGGTTGAAATGAGGGCCAGCCGAAGTGCAACCGTTGGTGTTGTCCC 10440752
Query 43949 CGAATTCGTGCACGTGAAATCCATGAAGACCTTT 43982
|||||||||| || || || ||||| ||||| ||
Sbjct 10440753 CGAATTCGTGTACATGGAAGCCATGCAGACCCTT 10440786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420125152579272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |