Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq969 120 3e-22 >seq969 Length=5813909 Score = 120 bits (132), Expect = 3e-22 Identities = 394/597 (66%), Gaps = 24/597 (4%) Strand=Plus/Plus Query 20170 TAGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCC 20229 ||| || || ||||||||||||||||| || || ||||| | || || | || || || Sbjct 2585465 TAGCGGTTCAATATGCGTTTTGTAGATATGAGCGTCTCCAAGAGTATGCACGAAGTCACC 2585524 Query 20230 GGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTT 20289 || | |||| ||| | ||| |||| ||| || || | | ||||| |||||||| Sbjct 2585525 TGGACGAAGATTAGTTATATGTGCAATCATGTAGGTAAGTAAAGAATACGAAGCAATGTT 2585584 Query 20290 AAAAGGAACTCCCAAACCCATGTC-TCCCGACCTCTGATACAGCTGACAGGAAAGCTCAC 20348 || || || ||||| ||||| || | | || | || |||| |||||||| ||||| | Sbjct 2585585 GAACGGTACGCCCAATCCCATATCGGCGCTACGT-TGGTACAATTGACAGGACAGCTCTC 2585643 Query 20349 CGTCAGCTACATAAAATTG-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAG 20407 ||| || || ||||||| || |||| ||||| || || | |||||| | | Sbjct 2585644 CGTTTGCAACGAAAAATTGCGCAAGACAA-TGACAAGGTGGTAACGCCATTTCTGGGATA 2585702 Query 20408 TCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAA 20467 || | || ||||| ||| |||| || ||||||| || | || || ||||| || Sbjct 2585703 TCAACGGGATTCCATGCAGACATTATTATTCTTCGGTCATTAGGGTTGTTTTTGATAGTG 2585762 Query 20468 TCCACAA--TGTACGACAATTGGTCAAACCCCTGGCC--TGTATAGTCAGCATCCGCGTC 20523 || | | ||| || | ||| || | || | || |||| | | | | | || Sbjct 2585763 TCAATTACTTGT-TGA-AGTTGATCTATGCCTTCACCCTTGTA-ATTTTCCTTACAAGTA 2585819 Query 20524 CACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTC 20583 | ||| || ||||| || | |||||| |||||||||||||| |||||||| Sbjct 2585820 C-GGTATTTGGCACCAAAATGACGCCACTGAAAACCGTAAACAGGCCCCAAATC-----G 2585873 Query 20584 CCTTCTGTGCGCCAGG-----CCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCC 20638 |||||| || | || || | | | |||||||| | || ||| ||| Sbjct 2585874 CCTTCTTCACGACTGGTGAAACCACATTTGTCAAGGAACTCTCGATTGCTGTTTCCATCC 2585933 Query 20639 CATATCT-TGACTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCA 20697 ||||| | | | | |||||||| | || | |||||| | || | | |||||| Sbjct 2585934 CATATATGTATATTTTTTTCTTGAAGTATTTTTGCA-TCAGTATTACCGTGAATAAACCA 2585992 Query 20698 AAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAA 20754 |||| || | | ||| | |||||||| ||||||||||| |||| ||| ||||| Sbjct 2585993 GAGCAATTCCTCAGCAACGGCACGCCAAAATACCCGCTTTGTAGTTAATAATGGAAA 2586049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441362836009040