Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq969 120 3e-22
>seq969
Length=5813909
Score = 120 bits (132), Expect = 3e-22
Identities = 394/597 (66%), Gaps = 24/597 (4%)
Strand=Plus/Plus
Query 20170 TAGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCC 20229
||| || || ||||||||||||||||| || || ||||| | || || | || || ||
Sbjct 2585465 TAGCGGTTCAATATGCGTTTTGTAGATATGAGCGTCTCCAAGAGTATGCACGAAGTCACC 2585524
Query 20230 GGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTT 20289
|| | |||| ||| | ||| |||| ||| || || | | ||||| ||||||||
Sbjct 2585525 TGGACGAAGATTAGTTATATGTGCAATCATGTAGGTAAGTAAAGAATACGAAGCAATGTT 2585584
Query 20290 AAAAGGAACTCCCAAACCCATGTC-TCCCGACCTCTGATACAGCTGACAGGAAAGCTCAC 20348
|| || || ||||| ||||| || | | || | || |||| |||||||| ||||| |
Sbjct 2585585 GAACGGTACGCCCAATCCCATATCGGCGCTACGT-TGGTACAATTGACAGGACAGCTCTC 2585643
Query 20349 CGTCAGCTACATAAAATTG-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAG 20407
||| || || ||||||| || |||| ||||| || || | |||||| | |
Sbjct 2585644 CGTTTGCAACGAAAAATTGCGCAAGACAA-TGACAAGGTGGTAACGCCATTTCTGGGATA 2585702
Query 20408 TCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAA 20467
|| | || ||||| ||| |||| || ||||||| || | || || ||||| ||
Sbjct 2585703 TCAACGGGATTCCATGCAGACATTATTATTCTTCGGTCATTAGGGTTGTTTTTGATAGTG 2585762
Query 20468 TCCACAA--TGTACGACAATTGGTCAAACCCCTGGCC--TGTATAGTCAGCATCCGCGTC 20523
|| | | ||| || | ||| || | || | || |||| | | | | | ||
Sbjct 2585763 TCAATTACTTGT-TGA-AGTTGATCTATGCCTTCACCCTTGTA-ATTTTCCTTACAAGTA 2585819
Query 20524 CACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTC 20583
| ||| || ||||| || | |||||| |||||||||||||| ||||||||
Sbjct 2585820 C-GGTATTTGGCACCAAAATGACGCCACTGAAAACCGTAAACAGGCCCCAAATC-----G 2585873
Query 20584 CCTTCTGTGCGCCAGG-----CCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCC 20638
|||||| || | || || | | | |||||||| | || ||| |||
Sbjct 2585874 CCTTCTTCACGACTGGTGAAACCACATTTGTCAAGGAACTCTCGATTGCTGTTTCCATCC 2585933
Query 20639 CATATCT-TGACTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCA 20697
||||| | | | | |||||||| | || | |||||| | || | | ||||||
Sbjct 2585934 CATATATGTATATTTTTTTCTTGAAGTATTTTTGCA-TCAGTATTACCGTGAATAAACCA 2585992
Query 20698 AAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAA 20754
|||| || | | ||| | |||||||| ||||||||||| |||| ||| |||||
Sbjct 2585993 GAGCAATTCCTCAGCAACGGCACGCCAAAATACCCGCTTTGTAGTTAATAATGGAAA 2586049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441362836009040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |