Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1310 141 2e-28
seq454 118 3e-21
seq145 118 3e-21
>seq1310
Length=3030561
Score = 141 bits (156), Expect = 2e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| ||||||||||| || |||| | ||||| || ||||| |||||||| || ||||||
Sbjct 645171 TCCTTTTGGATATTGTAATCGGACAAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAG 645112
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||| ||| |||||| |||||| |||||||| || |||||||| ||||| || |||
Sbjct 645111 ATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTT 645052
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || | || || || | ||||| ||||| || ||||| || |||||
Sbjct 645051 TCGATGGTGTCAGATGGCTCGACCTCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACA 644992
Query 288463 AATATCTGCATTATGTTATTCTA 288485
|| ||||||||| |||| ||||
Sbjct 644991 AAAATCTGCATTTTGTTCGTCTA 644969
>seq454
Length=983520
Score = 118 bits (130), Expect = 3e-21
Identities = 144/195 (74%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||||||||| || ||||| | | |||||||| ||||| || || || || || ||
Sbjct 254256 TTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCAAA 254315
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
||||| ||| ||||| ||||||| || ||||| || || |||||||| || |||||
Sbjct 254316 GATCAAACGTTGTTG---ATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCAC 254372
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|| || || | ||| | || ||||| | ||||| || || ||||||| ||| ||
Sbjct 254373 ATTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTT 254432
Query 288459 GACGAATATCTGCAT 288473
||||| || |||||
Sbjct 254433 AACGAAAATTTGCAT 254447
Score = 114 bits (126), Expect = 3e-20
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| | | | ||| | ||||| || || |||||||| || ||||| |
Sbjct 254677 CCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 254736
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| |||||||||||||| | |||||| || || || |||| ||| ||||| |||||||
Sbjct 254737 AAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTG---ATCTGGG 254793
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||| ||||| ||||| || || || || || || || | ||| | |||
Sbjct 254794 GGAATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCG 254853
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||||| || || ||||||| ||||| ||||| || |||||
Sbjct 254854 ACCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903
>seq145
Length=1338480
Score = 118 bits (130), Expect = 3e-21
Identities = 144/195 (74%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| ||||||||||||||||| || | || || || ||||| | ||||||||| |||||
Sbjct 898847 TCCTTTTGGATATTATAGTCAGCTAAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAA 898906
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| | ||| ||||| ||| ||| || ||||||||||| || ||||| || || ||
Sbjct 898907 ATTAAACGTTGTTG---ATCGGGGGGAATACCTTCTTTATCTTGAATTTTTGCCTTAACA 898963
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
| || |||| ||| | ||| || || || ||||| ||||| || || || || ||
Sbjct 898964 TGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTC 899023
Query 288460 ACGAATATCTGCATT 288474
||||| || ||||||
Sbjct 899024 ACGAAAATTTGCATT 899038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179627103534468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |