Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1310 141 2e-28 seq454 118 3e-21 seq145 118 3e-21 >seq1310 Length=3030561 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||||||||| || |||| | ||||| || ||||| |||||||| || |||||| Sbjct 645171 TCCTTTTGGATATTGTAATCGGACAAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAG 645112 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||| |||||| |||||| |||||||| || |||||||| ||||| || ||| Sbjct 645111 ATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTT 645052 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || || | ||||| ||||| || ||||| || ||||| Sbjct 645051 TCGATGGTGTCAGATGGCTCGACCTCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACA 644992 Query 288463 AATATCTGCATTATGTTATTCTA 288485 || ||||||||| |||| |||| Sbjct 644991 AAAATCTGCATTTTGTTCGTCTA 644969 >seq454 Length=983520 Score = 118 bits (130), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||| | | |||||||| ||||| || || || || || || Sbjct 254256 TTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCAAA 254315 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||| ||||| ||||||| || ||||| || || |||||||| || ||||| Sbjct 254316 GATCAAACGTTGTTG---ATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCAC 254372 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | ||| | || ||||| | ||||| || || ||||||| ||| || Sbjct 254373 ATTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTT 254432 Query 288459 GACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 254433 AACGAAAATTTGCAT 254447 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| | | | ||| | ||||| || || |||||||| || ||||| | Sbjct 254677 CCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 254736 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||||||||||| | |||||| || || || |||| ||| ||||| ||||||| Sbjct 254737 AAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTG---ATCTGGG 254793 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||| ||||| || || || || || || || | ||| | ||| Sbjct 254794 GGAATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCG 254853 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| || || ||||||| ||||| ||||| || ||||| Sbjct 254854 ACCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903 >seq145 Length=1338480 Score = 118 bits (130), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||||||||||||||| || | || || || ||||| | ||||||||| ||||| Sbjct 898847 TCCTTTTGGATATTATAGTCAGCTAAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAA 898906 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || | ||| ||||| ||| ||| || ||||||||||| || ||||| || || || Sbjct 898907 ATTAAACGTTGTTG---ATCGGGGGGAATACCTTCTTTATCTTGAATTTTTGCCTTAACA 898963 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 | || |||| ||| | ||| || || || ||||| ||||| || || || || || Sbjct 898964 TGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTC 899023 Query 288460 ACGAATATCTGCATT 288474 ||||| || |||||| Sbjct 899024 ACGAAAATTTGCATT 899038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179627103534468