Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq145 86.0 1e-11 >seq145 Length=1338480 Score = 86.0 bits (94), Expect = 1e-11 Identities = 183/271 (68%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 297436 TGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTG 297495 |||||||||||| || || ||||| |||||| |||||||| | | | |||||| || Sbjct 25106 TGTGAAAATATAACGAGCGCTCGCACAATCCTTTCCACCCTGTAGACGAGTACCGAATTG 25047 Query 297496 GCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCAC 297555 || ||| ||| | || || ||||| |||||||| | ||||| | || || Sbjct 25046 ACCGCGAGGCTCCAATAAATTAATATTATTTGAACCGACATAGTTTTGTGCCAAATTAAC 24987 Query 297556 GATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGC-GCTATGCTCTGCAACGTAAC 297614 ||||| |||| || || |||||| || ||||| || | || || ||||| ||| Sbjct 24986 AATGGTAGCTTGTAGCGACATTTCGCCGTGATGATAAGCAGACAT-TTCCGCAACAGAAC 24928 Query 297615 CGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCA 297674 | |||||||| || || || ||| | | || || |||||| || | || | Sbjct 24927 CAGACAACTGTGCGACTTTGACCTCGCGCTTGTCGTTACGTTTGAAACATGTGAACATAA 24868 Query 297675 CTTTCCGTTGAGAAGGTTTGAAACCATCAAC 297705 |||| || ||| || || |||||||| || Sbjct 24867 CTTTACGCTGACCGGGCTTAAAACCATCTAC 24837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102854480046100