Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1 105 7e-18 seq1255 93.3 5e-14 seq925 91.5 2e-13 seq1146 86.0 7e-12 >seq1 Length=10144477 Score = 105 bits (116), Expect = 7e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||||| |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 8103951 AAAAATTTACTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 8103892 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 8103891 TGACCACTATACTACCGAGGA 8103871 Score = 102 bits (112), Expect = 9e-17 Identities = 80/94 (85%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 56998 AAAAATTT---TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||||||| ||||| |||| | |||||||||| ||||||||||||||||||||| | Sbjct 7972677 AAAAATTTATTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 7972736 Query 57055 TACTCACCACTATACTACCGAGGATTG--AATAT 57086 |||| ||||||||||||||||||| || ||||| Sbjct 7972737 TACTGACCACTATACTACCGAGGACTGTTAATAT 7972770 Score = 93.3 bits (102), Expect = 5e-14 Identities = 85/107 (79%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 56976 TAACAACAAATTAACGTTTATGAAAAATTT----TCTCCTCGGCAAGAAATCGAACCCTG 57031 ||| || ||| ||||||| | ||| |||| ||||| || | | ||| |||||| | Sbjct 7959986 TAAAAAAAAAATAACGTTAAAAAAATATTTCATATCTCCCCGACGGGGAATTGAACCCCG 7959927 Query 57032 GTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||| ||||| |||||||||||| |||||| Sbjct 7959926 GTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGA 7959880 Score = 87.8 bits (96), Expect = 2e-12 Identities = 70/84 (83%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 56998 AAAAATTT---TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||||||| ||||| || | | ||| |||||| ||||||||||||||||||||| | Sbjct 6195938 AAAAATTTCTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 6195879 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| |||||||||||| |||||| Sbjct 6195878 TACTAACCACTATACTATCGAGGA 6195855 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 1836957 TTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 1836898 Query 57063 ACTATACTACCGAGGAT 57079 ||||||||| ||||||| Sbjct 1836897 ACTATACTATCGAGGAT 1836881 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1837863 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1837804 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 1837803 TACTATCGAGGATTG 1837789 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 6180079 TTCTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 6180020 Query 57063 ACTATACTACCGAGGAT 57079 ||||||||| ||||||| Sbjct 6180019 ACTATACTATCGAGGAT 6180003 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 |||| | |||| || | | ||| |||||| ||||||||||||||||||||| ||||| Sbjct 8023798 AAATATACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 8023739 Query 57060 ACCACTATACTACCGAGGATTG 57081 |||||||||||| |||||| || Sbjct 8023738 ACCACTATACTATCGAGGACTG 8023717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1837379 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 1837438 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 1837439 ATACTATCGAGGAT 1837452 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 1839461 TTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 1839402 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 1839401 ACTATACTATCGAGGA 1839386 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 6199734 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 6199675 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 6199674 ATACTATCGAGGAT 6199661 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 8512001 TTACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 8511942 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 8511941 CTATACTATCGAGGA 8511927 >seq1255 Length=13665606 Score = 93.3 bits (102), Expect = 5e-14 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 |||||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 1694941 TTTTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 1695000 Query 57063 ACTATACTACCGAGGATTGAATATAT 57088 ||||||||| |||||| || |||||| Sbjct 1695001 ACTATACTATCGAGGACTG-ATATAT 1695025 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1696344 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1696403 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 1696404 TACTATCGAGGATTG 1696418 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 1694767 TTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 1694708 Query 57064 CTATACTACCGAGGATTGA 57082 |||||||| |||||| ||| Sbjct 1694707 CTATACTATCGAGGACTGA 1694689 >seq925 Length=3171676 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 5/105 (5%) Strand=Plus/Minus Query 56975 TTAACAACAAATTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTC 57034 |||| || ||||||| || |||| || |||| || | | ||| |||||| |||| Sbjct 1579286 TTAAAAAAAAATTAA-----ATCCAAAACTTCCTCCCCGACGGGGAATTGAACCCCGGTC 1579232 Query 57035 TCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 ||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct 1579231 TCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGAT 1579187 >seq1146 Length=4288032 Score = 86.0 bits (94), Expect = 7e-12 Identities = 81/104 (78%), Gaps = 7/104 (7%) Strand=Plus/Minus Query 56975 TTAACAACAAATTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTC 57034 |||| || |||| | | ||||||| ||||| || | | ||| |||||| |||| Sbjct 3167623 TTAAAAAAAAATCATCATTTATGA-------TCTCCCCGACGGGGAATTGAACCCCGGTC 3167571 Query 57035 TCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 ||||||||||||||||| ||||| |||||||||||| |||||| Sbjct 3167570 TCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGA 3167527 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 3169738 TTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 3169679 Query 57063 ACTATACTACCGAGGA--TTGAAT 57084 ||||||||| |||||| |||||| Sbjct 3169678 ACTATACTATCGAGGATGTTGAAT 3169655 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/81 (84%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3302035 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 3302094 Query 57066 ATACTACCGAGGA--TTGAAT 57084 |||||| |||||| |||||| Sbjct 3302095 ATACTATCGAGGACGTTGAAT 3302115 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3299556 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 3299615 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 3299616 TACTATCGAGGACTG 3299630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543200536971040