Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1762 178 1e-39 seq454 134 1e-26 seq145 105 7e-18 >seq1762 Length=809008 Score = 178 bits (196), Expect = 1e-39 Identities = 528/808 (65%), Gaps = 25/808 (3%) Strand=Plus/Minus Query 154632 ACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTG 154691 |||||||||| ||| |||||||||||| ||| ||||| | || | ||||| || Sbjct 694517 ACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATATTCTGTTGATTACTCTTT 694458 Query 154692 ATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATA 154751 | || || || || || || || || ||||| |||||||| ||||| || | ||| ||| Sbjct 694457 CTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTCTCCACCTGCGATTCTATA 694398 Query 154752 ATTGTGCGAAAC---AGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCA 154808 || | |||| || ||| | || | ||||| | || || ||| ||| Sbjct 694397 ATGGA---AAACCAAAGGCTTTGGGCTTTAACTTTCTTATTAGCACGTCCTTCTTGTTCA 694341 Query 154809 TATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGG 154868 |||| | ||| | ||||| || ||| || | || || || |||||||| Sbjct 694340 TATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAACTTCGTGTAATCCGGGACACTTA 694281 Query 154869 TCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGC 154928 | |||||||| |||||||| || ||| || || || |||||||| || || || Sbjct 694280 TGTGGACACATTAATGACCAATCCTCATTTGCTTCAACACGCTTCATAAATAAGTCAGGT 694221 Query 154929 ACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTT 154988 | ||||||||| || || ||||| | || | || || || | ||| |||| Sbjct 694220 ATCCACAAAGCATAAAATAAATCTCTAGCTCGATGCTCCTCTTTTCCGGTATTTTTCTTT 694161 Query 154989 AAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCT 155048 |||| |||||| ||| | || || |||||||| ||||| || |||| || | || ||| Sbjct 694160 AAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCT 694101 Query 155049 TTGCGTTTTCCTCC---TTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAAT 155105 ||||| || || ||||||||| | ||| | |||||| | || ||||||| | Sbjct 694100 GGTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTATTGAAAACACGCAACATT 694041 Query 155106 GGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCT 155165 ||| ||| ||| | | ||||| || ||||| |||| |||| ||| || Sbjct 694040 GGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAATCGAAGTGCCTTTAGCGCGTATA 693981 Query 155166 TTATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACA---GTCCGCC 155222 ||||||||| | ||| | ||| || | ||||||| || ||||| | ||| Sbjct 693980 CAATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAATCAATGCACATTGATGTGCC 693921 Query 155223 AAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGAT 155282 | || | || || | ||| ||| || || || || | ||||| |||||| Sbjct 693920 GATGT---AAATATGCCATCAATGGAGTCGTCGACCATAGTTAATAGAAAACATGAAGAT 693864 Query 155283 AATTGAGGTTG-AGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTA----AACA 155337 ||||| || || || || |||| ||||| | ||| || || |||||| ||| Sbjct 693863 AATTGTGGCTGTTTGGTAG-CGGCAGCAAAGAGTGTTGGTGAGGCATGTGTAAAGTAACG 693805 Query 155338 TTTTGTTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATAC 155397 || || || || ||||| || ||||| || || || || || ||| ||||||| Sbjct 693804 TTCTGAAAGC----AAATTGTATGTGTCGATTGCCGCATCTATATCCTCACCATGTATAC 693749 Query 155398 CGATCGCCACGCGCATCAGCATGTGTTG 155425 | || || || ||||| | ||| || || Sbjct 693748 CAATGGCTACACGCATTAACATATGCTG 693721 Score = 109 bits (120), Expect = 5e-19 Identities = 547/865 (63%), Gaps = 15/865 (2%) Strand=Plus/Minus Query 153649 AATTTCGACATTCGA-----TGCTGCATTTGTCCACGGTAAATGCGATTGCATCCGCGGC 153703 ||||||| ||||| | ||| || |||||| ||||| ||| || |||| || || Sbjct 695508 AATTTCGTCATTCAACTCTTTGCGGCTTTTGTCTACGGTGAATTGTATGGCATTTGCCGC 695449 Query 153704 CGGTTTAGTTCGCAAATAATACATGCCGGTTTTCAAACCACGTTTCCAAGTGTGCATGTG 153763 || || || ||||||||||||||||||||||| ||||| ||||||| | | || Sbjct 695448 TGGCTTTGTGCGCAAATAATACATGCCGGTTTTTAAACCTGCTTTCCAACCATAAAAATG 695389 Query 153764 CACGCTAGTTAATAACGCGAAACTGGGCTGCGCTATAAACACGTTAAACGACTGGCTCTG 153823 | ||| | | || || | || | |||| | ||||| || || || || Sbjct 695388 TATAGAAGTAAGTTTGCCGTAATTAGGTTCTGCTACGTGTATATTAAAGGATTGACTTTG 695329 Query 153824 ATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATC-AAGTTTTTACTGCTCATTTCCC 153882 ||||| || || || ||||| || ||||| | || |||||||||| | || |||| Sbjct 695328 GTCGATAAAGGCACCACGATCAGCAGCCATTTTTATGGAAGTTTTTACCGAA-ATCTCCC 695270 Query 153883 ACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGATCAATTTTCTGCACACTGC 153942 | || ||||| || | | |||| | |||||| ||||| || || | | Sbjct 695269 AAACGGTTTTATACAGTTCGCGTATGTTTTGGGGTATAGATTCAATGTTTTGTATTGAAC 695210 Query 153943 CTCCGGCCGCTATAATGGAATTGCGCATGTGGTCGTCGTACAAATTTAGTCGACATAAAT 154002 | | | | ||||| ||| ||| | || || | || | | | | | Sbjct 695209 CACGGCTAGTGATAATTTGATTTTTCATATCATCATCCCATAAGCCCAATTCAGTAAGGT 695150 Query 154003 CTTCAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCACATACA 154062 | | ||| || ||||| | || ||||| || |||| | || ||||| ||| | Sbjct 695149 CACGCAACAAATGATGGTTTACAACCTGAAACTCACCGGAAAGCACACGGCGAGTATAAA 695090 Query 154063 AATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTG 154122 |||| |||| ||||||| || ||||| || || || | |||||| || || | || | Sbjct 695089 TATTGGAGGTGTACGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAAGCGG 695030 Query 154123 TGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTA 154182 | ||||| || | | |||||||| || | ||| ||||| ||| ||| | Sbjct 695029 TTGGCATGGGTGCAAGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCA 694970 Query 154183 AATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACAC 154242 | || | ||||||||| | | || || | | |||||| || || || |||| || Sbjct 694969 ACTCAGTCCAATTCCATAGTTCAGTCGGCTTTTTATCCCACATATCATACTGTAAAATAC 694910 Query 154243 CCAAACTCGCCGGACTGTCACT--ATAACTAGAGTACGGCCCGTTCAGTTTT--GCCAAG 154298 | || |||| || || |||| | ||| ||||| | |||| ||||| Sbjct 694909 CTTTGCTAACCGG--TGAACCTTCATAAGTTTCGTAAGGCCCAA--ATTTTTCAGCCAAT 694854 Query 154299 TCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATT 154358 ||||| ||||||||||| || ||||||| | ||||| ||||||| || || | Sbjct 694853 TCGCAGCTGGCTTCTAAAGCACCATAGTAAATTGTTTCAAATATTTGTTGATTCAATAGG 694794 Query 154359 TTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCTTGA 154418 |||| || |||||||| || | | || | || || || || | ||||| Sbjct 694793 AATGCTTGTTCGCTTTCGTAAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGT 694734 Query 154419 ATGCCCACTCCAACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTCCAGAGGATAA 154478 | || | || | || | || | ||||| |||| ||||| | || ||||| Sbjct 694733 ACACCAATACCGATCGGACGATGCCTGAAATTAGATTTCTTGGCTTCAGGCAATGGATAG 694674 Query 154479 TAATTGATATCGATAATTTTATTTA 154503 | || ||||| || |||||||||| Sbjct 694673 TGGTTTATATCAATGATTTTATTTA 694649 >seq454 Length=983520 Score = 134 bits (148), Expect = 1e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 ||||||||||| |||||||| || | | ||||| | ||||| | ||||||||||||| Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 | || | || || || || || ||||| ||||| || ||||| ||||| ||| ||| Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373 Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 ||| | |||||| | || ||||| | || | ||| ||||||||||||||||| Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433 Query 64430 ACGAAAATTTGCAT 64443 |||||||||||||| Sbjct 254434 ACGAAAATTTGCAT 254447 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| |||||||| | | || | ||||| || || || ||||| |||||||| || | Sbjct 254676 ACCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA 254735 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||| || || ||||||||| |||| | || || || || || || Sbjct 254736 CAAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGG 254795 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| || || ||| ||| ||| | ||||| | || || Sbjct 254796 AATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGAC 254855 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||| ||||||||||| || || ||||| |||||||| Sbjct 254856 CTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | || ||||| ||||| |||||||| || | | || || | ||| Sbjct 253525 AGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGTCCATCT 253584 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || |||| | ||||| || || ||||| || ||||| || ||| Sbjct 253585 TCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTGTCT 253644 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||| | || ||||| | || | |||| Sbjct 253645 TGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACTTCCAAGGTGATGGTC 253704 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||||||| || |||||||||||||| Sbjct 253705 TTGCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| |||||||| || | | |||||| | ||||| |||||||||||| Sbjct 254479 GTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCTAGCTGCTTGCCG 254538 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || || || || |||||||| ||||| || || || || || ||| Sbjct 254539 GCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTC 254598 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||| | || || || | ||| | ||| ||||||||||| || Sbjct 254599 ACATTCTCGATGGTATCTGATGGTTCAACCTCCAAAGTGATGGTTTTGCCGGTCAAGGTC 254658 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 254659 TTAACGAAGATTTGCAT 254675 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 64262 ATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGC 64321 ||||||||||| | | || || | ||||| | |||||| || || |||| | ||| Sbjct 255741 ATGTTGTAATCGGATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGC 255800 Query 64322 TGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTA 64381 || || || || ||||| |||||||| ||||| || || ||| ||| || | ||| Sbjct 255801 TGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGGTA 255860 Query 64382 TCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGC 64441 ||| | ||||| || | ||| | ||||||||| || | || || ||||| |||||| Sbjct 255861 TCAGATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGC 255920 Query 64442 ATTT 64445 |||| Sbjct 255921 ATTT 255924 >seq145 Length=1338480 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||||| || | || || || ||||| || || || || || | || || | ||| Sbjct 898826 AGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCTAAAGTACGACCATCT 898885 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || || || || |||| | || || || ||||| ||||| |||||||| ||| Sbjct 898886 TCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGAATACCTTCTTTATCT 898945 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || |||||| ||| ||| ||| | ||||| || || || || | ||| | |||| Sbjct 898946 TGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGTGATGGTC 899005 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | ||||| ||||||||||||||| Sbjct 899006 TTACCCGTGAGGGTTTTCACGAAAATTTGCATT 899038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499633520518640