Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1310 127 1e-24 seq454 114 9e-21 seq145 87.8 1e-12 >seq1310 Length=3030561 Score = 127 bits (140), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | || || || |||||||| || || ||||| || ||||||||| Sbjct 645207 CCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGAC 645148 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| ||||||||||| ||| | |||||||| ||||| || ||| Sbjct 645147 AAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 645088 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||| ||| ||| |||| || || || || || Sbjct 645087 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACC 645028 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| ||||| ||||| ||||| |||||||| ||||| || Sbjct 645027 TCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCATTTT 644978 >seq454 Length=983520 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| | || || |||||||||||||| || ||||| |||||||| || Sbjct 254677 CCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 254736 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||||| | ||||||||| || | |||||||| ||||| || ||| Sbjct 254737 AAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGA 254796 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || || ||| || ||| | || || ||||| ||| || Sbjct 254797 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGACC 254856 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||| || |||| || || || || ||||||||| Sbjct 254857 TCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCATA 254904 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || ||||| |||||||| || ||||| |||||||| ||| || ||| || | |||| Sbjct 253528 ACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCG--GATAATGTACGTCCATCTT 253585 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | | || || |||||| | |||||||||||||| || || || ||||||||||| Sbjct 253586 CCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTGTCTT 253645 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 || ||| || ||| | || || ||||| ||| || || ||||| ||||| | Sbjct 253646 GGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACTTCCAAGGTGATGGTCT 253705 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || |||| ||| || || |||||||||||| Sbjct 253706 TGCCCGTCAAAGTCTTAACGAAAATTTGCATA 253737 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| ||||| | || || ||||| || ||||| || ||||| |||||||| ||| Sbjct 254447 TGCCACCACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCG- 254505 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || || || | ||||||| || ||||| || | |||||||| ||||| || Sbjct 254506 -GACAAGGTGCGTCCATCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGG 254564 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||| ||||||||||| || ||| || ||| | || || ||||| ||| Sbjct 254565 AGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTC 254624 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || |||||||| || |||| || || || || ||||||||| Sbjct 254625 AACCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCATA 254676 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 14983 GAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCG 15042 || |||||||| |||||||| || | | | | | ||||| || || ||||| || Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313 Query 15043 TATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACA 15102 | |||||||| ||||| || ||||| ||||||||||| ||||| || ||| Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373 Query 15103 ATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTT 15162 | || || ||||| || || || ||||| |||||||| || |||| |||||| Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433 Query 15163 ACAAAAATTTGCAT 15176 || ||||||||||| Sbjct 254434 ACGAAAATTTGCAT 254447 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/192 (71%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 14995 ATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAAC 15052 |||||||||||| || ||| || | ||||| || || || |||||| | ||||||| Sbjct 255741 ATGTTGTAATCG--GATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAAC 255798 Query 15053 GCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAG 15112 ||||||| || ||||| ||||| ||||| || ||| || ||| |||| || | Sbjct 255799 GCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGG 255858 Query 15113 TATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTT 15172 |||| ||| || || | |||||||| || || || || || || || || |||| Sbjct 255859 TATCAGATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTT 255918 Query 15173 GCATATTTGAAA 15184 |||| || |||| Sbjct 255919 GCAT-TTCGAAA 255929 >seq145 Length=1338480 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 ||||| || | |||||| || ||||| || || || || ||| | | | | | ||||| Sbjct 898829 ACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCTAA-AGTACGACCATCTTC 898887 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| || ||| | || ||||| ||||| ||| ||||| ||||| || || Sbjct 898888 CAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGAATACCTTCTTTATCTTG 898947 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || ||| || |||||||| ||| || || | || ||||| || Sbjct 898948 AATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGTGATGGTCTT 899007 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || ||||| || ||||||||||| Sbjct 899008 ACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357384133578710