Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1762 174 1e-38 seq1310 136 4e-27 seq145 114 1e-20 seq454 84.2 2e-11 >seq1762 Length=809008 Score = 174 bits (192), Expect = 1e-38 Identities = 929/1464 (63%), Gaps = 54/1464 (4%) Strand=Plus/Plus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAA 123293 ||| |||| |||| |||||||| | || | || || || || ||| ||||| | Sbjct 694042 ATGTTGCGTGTTTTCAATAACGTAGCACGTTATGTGGATCAAGGTGGCGGTAAACGACCA 694101 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353 || || | || || || | || || ||||||| |||| | | || ||||| ||||| Sbjct 694102 GGAGCTTTTGCTATATACTTGGAGCCTTGGCACGCTGATATTTTTGAATTTTTGGATTTA 694161 Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAA---AGCCCGCGATTTGTTGTACGCTTTATGG 123410 || | || || || |||| || | ||| | ||||| || || ||||| ||| Sbjct 694162 AA--GAAAAATACCGGAA-AAGAGGAGCATCGAGCTAGAGATTTATTTTATGCTTTGTGG 694218 Query 123411 GTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCC 123470 |||| || || |||||| || || ||| | | | ||||| | |||||||| Sbjct 694219 ATACCTGACTTATTTATGAAGCGTGTTGAAGCAAATGAGGATTGGTCATTAATGTGTCCA 694278 Query 123471 GATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAA 123530 || ||||||||| || ||| |||| || | | || || |||| ||| | || Sbjct 694279 CATAAGTGTCCCGGATTACACGAAGTTTGGGGTGAAGAATTCGAAAAGTTATACACAAAA 694338 Query 123531 TACGAGCGCGAAGGCAAACAGGTTAGTCAG---GTTCCGGCAC---GTGATTTGTTCAAA 123584 || || | ||||| || | || | || ||| || | | || ||| Sbjct 694339 TATGAACAAGAAGG---ACGTGCTAATAAGAAAGTTAAAGCCCAAAGCCTTTGGTTT--- 694392 Query 123585 TTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGC 123644 | ||||| ||| | || || || || || || ||||| ||| | || || || || || Sbjct 694393 TCCATTATAGAATCGCAGGTGGAGACGGGCACACCGTATATGTTATATAAGGATGCTTGT 694452 Query 123645 AACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAA 123704 || || || | ||||| || | || ||||| ||||| |||||| | ||| | ||| Sbjct 694453 AATAGAAAGAGTAATCAACAGAATATTGGCACAATTAAATGCAGTAATTTATGCACAGAA 694512 Query 123705 ATTATCGAATA--CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG 123762 ||| | || || |||| | || | || || || || ||||| || |||||| | Sbjct 694513 ATTGTTGAGTATTCAGCAC--CTGACGAGGTAGCTGTATGCAATTTAGCATCGATTGCCC 694570 Query 123763 TGAATC-----GTTGC----GTCGAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCA 123813 | ||| ||| | | | |||| || |||||| |||| || | | Sbjct 694571 TCAATATGTTTGTTACACCAGACAAAAAATACGATTTTAA-------ACGCCTCAAGGAA 694623 Query 123814 -TAACAAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTG 123872 | || || || || |||||| || ||||| || ||| | || ||||| ||| Sbjct 694624 GTCACTAAGACCGTGACGCGGAATTTAAATAAAATCATTGATATAAACCACTATCCATTG 694683 Query 123873 GAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTG 123932 ||||| |||||||| | || | ||| |||| | || | ||||| || Sbjct 694684 CCTGAAGCCAAGAAATCTAATTTCAGGCATCGTCCGATCGGTATTGGTGTACAAGGTTTA 694743 Query 123933 GCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAAT 123992 || ||||| || | | ||||| || ||||||||||| ||||| | | ||| Sbjct 694744 GCAGACGCATTAATCCTCATGCGCTATCCTTACGAAAGCGAACAAGCATTCCTATTGAAT 694803 Query 123993 ACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGC-GAA 124051 |||||| ||||||||||| || || ||||| || || ||||||||| | || ||| Sbjct 694804 CAACAAATATTTGAAACAATTTACTATGGTGCTTTAGAAGCCAGCTGCGAATTGGCTGAA 694863 Query 124052 AATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTA 124111 || | ||| | ||||||| ||| | || |||| ||| ||||||||| ||||| Sbjct 694864 AAATTTGGGC-CTTACGAAACTTATGAAGGTTCACCGGTTAGCAAAGGTATTTTACAGTA 694922 Query 124112 CGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCAT 124171 || |||||| || | ||||| | | ||| | |||| | || ||| || || Sbjct 694923 TGATATGTGGGATAAAAAGCCGACTGAACTATGGAATTGGACTGAGTTGAAAGAAAAAAT 694982 Query 124172 ATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGC 124231 || || ||| | || ||||| | | | || |||||| || || | || || Sbjct 694983 TAAGAAACATGGTGTACGCAACTCTTTACTACTTGCACCCATGCCAACCGCTTCAACGGC 695042 Query 124232 TCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACG 124291 ||||| | || || || ||||| || ||||||| ||| |||| | || || || Sbjct 695043 ACAAATAATGGGTAATAATGAATCTTTTGAGCCGTACACCTCCAATATTTATACTCGCCG 695102 Query 124292 AGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTT 124351 ||| | |||| || ||||| || |||| ||||||||| || ||| | | || Sbjct 695103 TGTGCTTTCCGGTGAGTTTCAGGTTGTAAACCATCATTTGTTGCGTGACCTTACTGAATT 695162 Query 124352 AAATTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCG 124411 || | ||||| | ||| || ||||||| | | |||| | || Sbjct 695163 GGGCTTATGGGATGATGATATGAAAAATCAAATTATCACTAGCCGTGGTTCAATACAAAA 695222 Query 124412 CATCGCTTCGATTCCGGAACACGTCAAGC-AACTGTACAAAACCGTGTGGGAAAT---GA 124467 ||| | || || || || || | | || ||||||| |||||||| ||||| || | Sbjct 695223 CATTGAATCTATACCCCAAAACAT-ACGCGAACTGTATAAAACCGTTTGGGAGATTTCGG 695281 Query 124468 AAAATAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAAT 124527 || |||| | || ||||||| | || || || || | | || |||||||||| Sbjct 695282 TAA--AAAC-TTCCATAAAAATGGCTGCTGATCGTGGTGCCTTTATCGACCAAAGTCAAT 695338 Query 124528 CTTTTAACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACG 124587 | ||||| | ||||| ||||| | |||| | | || ||||| | | | Sbjct 695339 CCTTTAATATACACGTAGCAGAACCTAATTACGGCAAACTTACTTCTATACATTTTTATG 695398 Query 124588 CGTGGAGCAGC-GGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGAT 124646 |||| ||| || | ||||| ||||||||||| || | || || || ||||| || Sbjct 695399 GTTGGA-AAGCAGGTTTAAAAACCGGCATGTATTATTTGCGCACAAAGCCAGCGGCAAAT 695457 Query 124647 GCCATTCAATTTACCGTCGACAAA 124670 ||||| ||||| ||||| |||||| Sbjct 695458 GCCATACAATTCACCGTAGACAAA 695481 >seq1310 Length=3030561 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| | || || ||||| |||||||||||||| |||||| Sbjct 645210 ATACCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCG 645151 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||||||||| || ||| | ||||| ||||| || || || Sbjct 645150 GACAAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGT 645091 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| ||||| ||||| ||| | |||||| || | |||| Sbjct 645090 GGGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCG 645031 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || || || || || ||||| |||||||| ||||| Sbjct 645030 ACCTCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981 >seq145 Length=1338480 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAAT 45186 || ||||| || | || || ||||||||||||||||| || ||| | | | | || Sbjct 898825 CAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCTAAAG-TACGACCAT 898883 Query 45187 CGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTAT 45246 | |||| ||||||||| ||| | || || ||||| || || || ||||| |||||||||| Sbjct 898884 CTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGAATACCTTCTTTAT 898943 Query 45247 CTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 ||||||||||| || | || | || || || | ||||| || ||||| | | Sbjct 898944 CTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGTGATGG 899003 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGC 45343 | || || || || ||||| || ||||||||||| || Sbjct 899004 TCTTACCCGTGAGGGTTTTCACGAAAATTTGCATTGC 899040 >seq454 Length=983520 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| || || || || | ||||| ||||| || || || ||||| ||||| || Sbjct 254292 ATCTTCCAACTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTT 254351 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| ||||| || | || | ||| || || | ||| ||||| | || | Sbjct 254352 GTCTTGGATTTTAGCCTTCACATTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGAT 254411 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| | |||||| || ||||||||||| Sbjct 254412 GGTTTTGCCGGTCAAAGTTTTAACGAAAATTTGCAT 254447 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| | | ||| || | ||| || || || ||||||||||| || || || Sbjct 254674 ATACCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCA 254733 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || |||| |||||| || || | ||||| ||||| || || || Sbjct 254734 GACAAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGG 254793 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| |||||||| || || |||| || | ||| || || | ||| Sbjct 254794 GGAATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCG 254853 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | ||||||||||| | || || || || |||||||| Sbjct 254854 ACCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451992996027760