Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 174 1e-38
seq1310 136 4e-27
seq145 114 1e-20
seq454 84.2 2e-11
>seq1762
Length=809008
Score = 174 bits (192), Expect = 1e-38
Identities = 929/1464 (63%), Gaps = 54/1464 (4%)
Strand=Plus/Plus
Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAA 123293
||| |||| |||| |||||||| | || | || || || || ||| ||||| |
Sbjct 694042 ATGTTGCGTGTTTTCAATAACGTAGCACGTTATGTGGATCAAGGTGGCGGTAAACGACCA 694101
Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353
|| || | || || || | || || ||||||| |||| | | || ||||| |||||
Sbjct 694102 GGAGCTTTTGCTATATACTTGGAGCCTTGGCACGCTGATATTTTTGAATTTTTGGATTTA 694161
Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAA---AGCCCGCGATTTGTTGTACGCTTTATGG 123410
|| | || || || |||| || | ||| | ||||| || || ||||| |||
Sbjct 694162 AA--GAAAAATACCGGAA-AAGAGGAGCATCGAGCTAGAGATTTATTTTATGCTTTGTGG 694218
Query 123411 GTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCC 123470
|||| || || |||||| || || ||| | | | ||||| | ||||||||
Sbjct 694219 ATACCTGACTTATTTATGAAGCGTGTTGAAGCAAATGAGGATTGGTCATTAATGTGTCCA 694278
Query 123471 GATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAA 123530
|| ||||||||| || ||| |||| || | | || || |||| ||| | ||
Sbjct 694279 CATAAGTGTCCCGGATTACACGAAGTTTGGGGTGAAGAATTCGAAAAGTTATACACAAAA 694338
Query 123531 TACGAGCGCGAAGGCAAACAGGTTAGTCAG---GTTCCGGCAC---GTGATTTGTTCAAA 123584
|| || | ||||| || | || | || ||| || | | || |||
Sbjct 694339 TATGAACAAGAAGG---ACGTGCTAATAAGAAAGTTAAAGCCCAAAGCCTTTGGTTT--- 694392
Query 123585 TTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGC 123644
| ||||| ||| | || || || || || || ||||| ||| | || || || || ||
Sbjct 694393 TCCATTATAGAATCGCAGGTGGAGACGGGCACACCGTATATGTTATATAAGGATGCTTGT 694452
Query 123645 AACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAA 123704
|| || || | ||||| || | || ||||| ||||| |||||| | ||| | |||
Sbjct 694453 AATAGAAAGAGTAATCAACAGAATATTGGCACAATTAAATGCAGTAATTTATGCACAGAA 694512
Query 123705 ATTATCGAATA--CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG 123762
||| | || || |||| | || | || || || || ||||| || |||||| |
Sbjct 694513 ATTGTTGAGTATTCAGCAC--CTGACGAGGTAGCTGTATGCAATTTAGCATCGATTGCCC 694570
Query 123763 TGAATC-----GTTGC----GTCGAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCA 123813
| ||| ||| | | | |||| || |||||| |||| || | |
Sbjct 694571 TCAATATGTTTGTTACACCAGACAAAAAATACGATTTTAA-------ACGCCTCAAGGAA 694623
Query 123814 -TAACAAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTG 123872
| || || || || |||||| || ||||| || ||| | || ||||| |||
Sbjct 694624 GTCACTAAGACCGTGACGCGGAATTTAAATAAAATCATTGATATAAACCACTATCCATTG 694683
Query 123873 GAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTG 123932
||||| |||||||| | || | ||| |||| | || | ||||| ||
Sbjct 694684 CCTGAAGCCAAGAAATCTAATTTCAGGCATCGTCCGATCGGTATTGGTGTACAAGGTTTA 694743
Query 123933 GCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAAT 123992
|| ||||| || | | ||||| || ||||||||||| ||||| | | |||
Sbjct 694744 GCAGACGCATTAATCCTCATGCGCTATCCTTACGAAAGCGAACAAGCATTCCTATTGAAT 694803
Query 123993 ACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGC-GAA 124051
|||||| ||||||||||| || || ||||| || || ||||||||| | || |||
Sbjct 694804 CAACAAATATTTGAAACAATTTACTATGGTGCTTTAGAAGCCAGCTGCGAATTGGCTGAA 694863
Query 124052 AATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTA 124111
|| | ||| | ||||||| ||| | || |||| ||| ||||||||| |||||
Sbjct 694864 AAATTTGGGC-CTTACGAAACTTATGAAGGTTCACCGGTTAGCAAAGGTATTTTACAGTA 694922
Query 124112 CGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCAT 124171
|| |||||| || | ||||| | | ||| | |||| | || ||| || ||
Sbjct 694923 TGATATGTGGGATAAAAAGCCGACTGAACTATGGAATTGGACTGAGTTGAAAGAAAAAAT 694982
Query 124172 ATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGC 124231
|| || ||| | || ||||| | | | || |||||| || || | || ||
Sbjct 694983 TAAGAAACATGGTGTACGCAACTCTTTACTACTTGCACCCATGCCAACCGCTTCAACGGC 695042
Query 124232 TCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACG 124291
||||| | || || || ||||| || ||||||| ||| |||| | || || ||
Sbjct 695043 ACAAATAATGGGTAATAATGAATCTTTTGAGCCGTACACCTCCAATATTTATACTCGCCG 695102
Query 124292 AGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTT 124351
||| | |||| || ||||| || |||| ||||||||| || ||| | | ||
Sbjct 695103 TGTGCTTTCCGGTGAGTTTCAGGTTGTAAACCATCATTTGTTGCGTGACCTTACTGAATT 695162
Query 124352 AAATTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCG 124411
|| | ||||| | ||| || ||||||| | | |||| | ||
Sbjct 695163 GGGCTTATGGGATGATGATATGAAAAATCAAATTATCACTAGCCGTGGTTCAATACAAAA 695222
Query 124412 CATCGCTTCGATTCCGGAACACGTCAAGC-AACTGTACAAAACCGTGTGGGAAAT---GA 124467
||| | || || || || || | | || ||||||| |||||||| ||||| || |
Sbjct 695223 CATTGAATCTATACCCCAAAACAT-ACGCGAACTGTATAAAACCGTTTGGGAGATTTCGG 695281
Query 124468 AAAATAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAAT 124527
|| |||| | || ||||||| | || || || || | | || ||||||||||
Sbjct 695282 TAA--AAAC-TTCCATAAAAATGGCTGCTGATCGTGGTGCCTTTATCGACCAAAGTCAAT 695338
Query 124528 CTTTTAACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACG 124587
| ||||| | ||||| ||||| | |||| | | || ||||| | | |
Sbjct 695339 CCTTTAATATACACGTAGCAGAACCTAATTACGGCAAACTTACTTCTATACATTTTTATG 695398
Query 124588 CGTGGAGCAGC-GGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGAT 124646
|||| ||| || | ||||| ||||||||||| || | || || || ||||| ||
Sbjct 695399 GTTGGA-AAGCAGGTTTAAAAACCGGCATGTATTATTTGCGCACAAAGCCAGCGGCAAAT 695457
Query 124647 GCCATTCAATTTACCGTCGACAAA 124670
||||| ||||| ||||| ||||||
Sbjct 695458 GCCATACAATTCACCGTAGACAAA 695481
>seq1310
Length=3030561
Score = 136 bits (150), Expect = 4e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || || || | |||||| | || || ||||| |||||||||||||| ||||||
Sbjct 645210 ATACCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCG 645151
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | ||| ||||||||||| || ||| | ||||| ||||| || || ||
Sbjct 645150 GACAAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGT 645091
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || |||||||| ||||| ||||| ||||| ||| | |||||| || | ||||
Sbjct 645090 GGGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCG 645031
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | ||| | || || || || || ||||| |||||||| |||||
Sbjct 645030 ACCTCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981
>seq145
Length=1338480
Score = 114 bits (126), Expect = 1e-20
Identities = 157/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAAT 45186
|| ||||| || | || || ||||||||||||||||| || ||| | | | | ||
Sbjct 898825 CAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCTAAAG-TACGACCAT 898883
Query 45187 CGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTAT 45246
| |||| ||||||||| ||| | || || ||||| || || || ||||| ||||||||||
Sbjct 898884 CTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGAATACCTTCTTTAT 898943
Query 45247 CTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306
||||||||||| || | || | || || || | ||||| || ||||| | |
Sbjct 898944 CTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGTGATGG 899003
Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGC 45343
| || || || || ||||| || ||||||||||| ||
Sbjct 899004 TCTTACCCGTGAGGGTTTTCACGAAAATTTGCATTGC 899040
>seq454
Length=983520
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| ||||| || || || || | ||||| ||||| || || || ||||| ||||| ||
Sbjct 254292 ATCTTCCAACTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTT 254351
Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
||||| ||||| || | || | ||| || || | ||| ||||| | || |
Sbjct 254352 GTCTTGGATTTTAGCCTTCACATTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGAT 254411
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||||||||| | |||||| || |||||||||||
Sbjct 254412 GGTTTTGCCGGTCAAAGTTTTAACGAAAATTTGCAT 254447
Score = 82.4 bits (90), Expect = 7e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || ||||| | | ||| || | ||| || || || ||||||||||| || || ||
Sbjct 254674 ATACCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCA 254733
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || || |||| |||||| || || | ||||| ||||| || || ||
Sbjct 254734 GACAAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGG 254793
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| ||||| |||||||| || || |||| || | ||| || || | |||
Sbjct 254794 GGAATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCG 254853
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | ||| | ||||||||||| | || || || || ||||||||
Sbjct 254854 ACCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451992996027760
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