Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq925 100 5e-16
seq1762 91.5 2e-13
>seq925
Length=3171676
Score = 100 bits (110), Expect = 5e-16
Identities = 305/465 (66%), Gaps = 16/465 (3%)
Strand=Plus/Minus
Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982
||||| || || || || | |||||||| || ||||| ||||| ||||| | | | |
Sbjct 2021626 CACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAG 2021567
Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAG 160042
|||||||| | ||||| || |||||||| || | |||||| |||||||| ||
Sbjct 2021566 CCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAAT 2021507
Query 160043 ATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAG----AGGCGTTGGTGTC 160098
|| || || || || ||||| || | | | |||||||| || | ||| |
Sbjct 2021506 ATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAAGAA 2021447
Query 160099 ATGGGTCCACCTTTTGGCCCATTCAGCCTT---CTTTGCGATGCACGGCATGCGCTCGAC 160155
|| ||| ||||| |||||||| ||| | ||| ||||| ||| |
Sbjct 2021446 AT----CCAAGCCAGCGCCCAATCAGCCTTACGCTTAACA--GCA-GGCATCGTCTCAAT 2021394
Query 160156 GGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGA 160215
|| || ||||| ||| | || | ||||| || || |||| | |
Sbjct 2021393 TGCATTGAACAAATAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCT 2021334
Query 160216 GTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC 160275
|||||||||| |||||||||||| || || || ||||| ||||||| | ||||||
Sbjct 2021333 ATACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTC 2021274
Query 160276 CAGATAC-TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGG 160334
| | ||| || || || || |||| | || ||| ||| |||| || | || || |
Sbjct 2021273 C-GTTACTTGAACTTCTTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCG 2021215
Query 160335 CGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGT 160379
||| ||||| || || || ||||| || | |||||||| ||||
Sbjct 2021214 AGGCGGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGT 2021170
>seq1762
Length=809008
Score = 91.5 bits (100), Expect = 2e-13
Identities = 321/496 (65%), Gaps = 4/496 (1%)
Strand=Plus/Minus
Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899
||||| || ||||| || ||||| || | || ||| | | | || ||| |||||||||
Sbjct 695480 TTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCG 695421
Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959
|| |||| || | ||| || || | || || |||| ||||||| || ||
Sbjct 695420 GTTTTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGGT 695361
Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGC 204018
|| || | ||| || || | || || ||||||||||| |||||| || ||||| || ||
Sbjct 695360 TCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGAT-AAAGGCACCACGATCAGCAGC 695302
Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTG 204078
||| || || || || |||||||||||| || || || ||| || | |||
Sbjct 695301 CATTTTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTATGTT 695242
Query 204079 TTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCG 204137
||| || | | || | | || || || || || | | || | | | ||
Sbjct 695241 TTGGGGTATAGATT-CAATGTTTTGTATTGAACCACGGCTAGTGATAATTTGATTTTTCA 695183
Query 204138 TCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCT 204197
| || || |||| | |||||| | || || |||| || || |||| | | ||
Sbjct 695182 TATCATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAACCT 695123
Query 204198 GAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCT 204257
|||| || ||||| ||||| | || || | | ||| |||| | || || || | |
Sbjct 695122 GAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAGATT 695063
Query 204258 CGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGT 204317
| || || || | || || || || || || |||||||| || || || | ||||
Sbjct 695062 CATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAGAGT 695003
Query 204318 TGCGCACACCGTATTT 204333
|||| ||||| | |||
Sbjct 695002 TGCGTACACCATGTTT 694987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795137249371360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |