Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq925 100 5e-16 seq1762 91.5 2e-13 >seq925 Length=3171676 Score = 100 bits (110), Expect = 5e-16 Identities = 305/465 (66%), Gaps = 16/465 (3%) Strand=Plus/Minus Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982 ||||| || || || || | |||||||| || ||||| ||||| ||||| | | | | Sbjct 2021626 CACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAG 2021567 Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAG 160042 |||||||| | ||||| || |||||||| || | |||||| |||||||| || Sbjct 2021566 CCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAAT 2021507 Query 160043 ATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAG----AGGCGTTGGTGTC 160098 || || || || || ||||| || | | | |||||||| || | ||| | Sbjct 2021506 ATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAAGAA 2021447 Query 160099 ATGGGTCCACCTTTTGGCCCATTCAGCCTT---CTTTGCGATGCACGGCATGCGCTCGAC 160155 || ||| ||||| |||||||| ||| | ||| ||||| ||| | Sbjct 2021446 AT----CCAAGCCAGCGCCCAATCAGCCTTACGCTTAACA--GCA-GGCATCGTCTCAAT 2021394 Query 160156 GGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGA 160215 || || ||||| ||| | || | ||||| || || |||| | | Sbjct 2021393 TGCATTGAACAAATAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCT 2021334 Query 160216 GTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC 160275 |||||||||| |||||||||||| || || || ||||| ||||||| | |||||| Sbjct 2021333 ATACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTC 2021274 Query 160276 CAGATAC-TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGG 160334 | | ||| || || || || |||| | || ||| ||| |||| || | || || | Sbjct 2021273 C-GTTACTTGAACTTCTTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCG 2021215 Query 160335 CGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGT 160379 ||| ||||| || || || ||||| || | |||||||| |||| Sbjct 2021214 AGGCGGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGT 2021170 >seq1762 Length=809008 Score = 91.5 bits (100), Expect = 2e-13 Identities = 321/496 (65%), Gaps = 4/496 (1%) Strand=Plus/Minus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 ||||| || ||||| || ||||| || | || ||| | | | || ||| ||||||||| Sbjct 695480 TTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCG 695421 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 || |||| || | ||| || || | || || |||| ||||||| || || Sbjct 695420 GTTTTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGGT 695361 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGC 204018 || || | ||| || || | || || ||||||||||| |||||| || ||||| || || Sbjct 695360 TCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGAT-AAAGGCACCACGATCAGCAGC 695302 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTG 204078 ||| || || || || |||||||||||| || || || ||| || | ||| Sbjct 695301 CATTTTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTATGTT 695242 Query 204079 TTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCG 204137 ||| || | | || | | || || || || || | | || | | | || Sbjct 695241 TTGGGGTATAGATT-CAATGTTTTGTATTGAACCACGGCTAGTGATAATTTGATTTTTCA 695183 Query 204138 TCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCT 204197 | || || |||| | |||||| | || || |||| || || |||| | | || Sbjct 695182 TATCATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAACCT 695123 Query 204198 GAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCT 204257 |||| || ||||| ||||| | || || | | ||| |||| | || || || | | Sbjct 695122 GAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAGATT 695063 Query 204258 CGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGT 204317 | || || || | || || || || || || |||||||| || || || | |||| Sbjct 695062 CATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAGAGT 695003 Query 204318 TGCGCACACCGTATTT 204333 |||| ||||| | ||| Sbjct 695002 TGCGTACACCATGTTT 694987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795137249371360