Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq454 141 2e-28 seq145 134 3e-26 seq1310 123 6e-23 >seq454 Length=983520 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||| || || |||||||||| ||||||||| | || || Sbjct 253516 CGAAGACGTAGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTA 253575 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||||||||| || ||||| || | |||||| || || ||| || ||| Sbjct 253576 CGTCCATCTTCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATACCT 253635 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| |||||| |||| ||| |||| || ||| || ||||| Sbjct 253636 TCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACTTCCAAG 253695 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | ||| || || |||||||| Sbjct 253696 GTGATGGTCTTGCCCGTCAAAGTCTTAACGAAAATTTG 253733 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 199436 GACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCG 199495 || || ||||||| ||||||||||| |||||| | ||||||||||| |||||| ||||| Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313 Query 199496 AAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACG 199555 ||||| | ||| || || || || ||| ||||| || || || || |||||| Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373 Query 199556 GATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTC 199615 || | ||| || | || || || ||||| ||||| || || || || | |||||| Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433 Query 199616 ACAAAAATTTG 199626 || |||||||| Sbjct 254434 ACGAAAATTTG 254444 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || ||||||||||||| ||||||||||| |||||| | ||| |||||||| || Sbjct 254701 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCGTCTTCCAGTTGT 254760 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| || || | ||| || || || || ||| ||||| || || ||||| Sbjct 254761 TTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCTTGGATCTTG 254820 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || |||| ||| |||| || ||| || ||||| ||||| || || || || Sbjct 254821 GCCTTGACATTCTCGATGGTATCTGATGGTTCGACCTCCAAAGTGATGGTTTTGCCGGTC 254880 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || || || || ||||| Sbjct 254881 AAGGTCTTAACGAAGATTTG 254900 Score = 98.7 bits (108), Expect = 2e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 199450 GTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTG 199509 |||||| || | || || | ||||||||||| |||||| || ||||| || | |||||| Sbjct 255743 GTTGTAATCGGATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTG 255802 Query 199510 CTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || || || ||| |||||| || || ||||| |||||| ||||| ||| || Sbjct 255803 TTGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGGTATC 255862 Query 199570 TGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || ||| || |||| || || ||||| || || || || ||||| || ||||| Sbjct 255863 AGATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTG 255919 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | || || || ||||||||||||| ||||||||||| |||||| | ||| || Sbjct 253752 CAGGACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCGTC 253811 Query 199477 TTCCAGCTGCTTTCCGGCGAAGAT 199500 |||||| || || ||||| ||||| Sbjct 253812 TTCCAGTTGTTTGCCGGCAAAGAT 253835 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | || || || ||||||||||||| ||||||||||| |||||| | ||| || Sbjct 254919 CAGGACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCGTC 254978 Query 199477 TTCCAGCTGCTTTCCGGCGAAGAT 199500 |||||| || || ||||| ||||| Sbjct 254979 TTCCAGTTGTTTGCCGGCAAAGAT 255002 >seq145 Length=1338480 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| | ||| || | ||| | || ||||||||||||| || |||||||| ||||| Sbjct 898816 TCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCTAAAGT 898875 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||| || ||||| ||||| || | ||| || || || || ||| || Sbjct 898876 ACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGAATACC 898935 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || ||||| ||| ||| || |||| || || | | ||| || || | Sbjct 898936 TTCTTTATCTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGACCTCAAG 898995 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||||||||| |||||||| |||||||| Sbjct 898996 AGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTG 899034 >seq1310 Length=3030561 Score = 123 bits (136), Expect = 6e-23 Identities = 156/211 (74%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || ||||||||||||| ||||| || | |||||| | |||||||||| || Sbjct 645184 GTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACCATCTTCCAATTG 645125 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || ||||||||||| | ||| || || || || || |||||| || || || || Sbjct 645124 TTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGAT-TT 645066 Query 199546 TTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | || || || ||||| |||||| | || || || ||||| ||||| |||||||| | Sbjct 645065 TGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTGATGGTCTTACCAG 645006 Query 199605 TGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 | || ||||| |||||||| || |||||| Sbjct 645005 TCAGTGTTTTGACAAAAATCTG---CATTTT 644978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178894320491002