Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1310 98.7 7e-16 seq145 96.9 2e-15 >seq1310 Length=3030561 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||||| ||||| || | || || ||||| ||||| ||||||| | Sbjct 645207 CCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGAC 645148 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| ||||||||||| ||| | || || ||||| || ||||| | || Sbjct 645147 AAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 645088 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| ||| | | | | ||||| | || || Sbjct 645087 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACC 645028 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || ||||| || | ||||| || || |||||||| Sbjct 645027 TCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981 >seq145 Length=1338480 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | |||||| || || || || || || ||||| |||||||| || || Sbjct 898811 CCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCT 898870 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| |||| |||||| || | ||||||||||| || ||||| | ||| Sbjct 898871 AAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGA 898930 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||||| || |||||| ||| || ||| || || || | | ||| | Sbjct 898931 ATACCTTCTTTATCTTGAATTTTTGCCTTAACATGCTCGATA--GTATCCGAGGGTTCGA 898988 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || || |||||||| | ||||| ||||| || ||||| Sbjct 898989 CCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347361954177998