Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq925 217 1e-51 seq145 120 3e-22 seq1310 114 1e-20 seq454 114 1e-20 >seq925 Length=3171676 Score = 217 bits (240), Expect = 1e-51 Identities = 387/556 (70%), Gaps = 8/556 (1%) Strand=Plus/Minus Query 132876 CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAG 132935 |||||| | ||||||||| || || || || ||||| || |||||||| | || || | Sbjct 2021645 CAAATGTTGGAACATCAAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAA 2021586 Query 132936 TTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGC 132995 || ||| ||| || ||||| ||||| | || ||||| || |||||||| || | || Sbjct 2021585 CTCATTGGAGAATGTTAAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGC 2021526 Query 132996 GAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA 133055 |||||||| |||||| | ||| || || || || || || | | || || || || Sbjct 2021525 AAAACTGCCGCTAAAGAATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAA 2021466 Query 133056 CGTGGCTT-CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGAC-GCAC 133113 | || ||||| | ||||| ||||||||| || ||||| || || ||| Sbjct 2021465 GTTTGCAGACTTTGAAGAA-ATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCA- 2021408 Query 133114 GGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCT-TCCGAGGAACGCACG-TAGG 133171 |||||||| || || || || |||||| ||| ||| | | | | | | || | Sbjct 2021407 GGCATCGTCTCAATTGCATTGAACAAAT--AGTCTCTTTGTTTGCCGTCCTTAATATATG 2021350 Query 133172 TGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGT 133231 |||| || | | ||||||||| ||||| || || ||||| ||||||||||| |||| Sbjct 2021349 TGTCAATTAATATGCTATACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGT 2021290 Query 133232 AAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGT 133291 | || ||||||||||| || || ||||||||| |||||| || |||| |||||| | Sbjct 2021289 AGAAACACCGCGCCTCCGTTACTTGAACTTCTTGACTGAAACGTTCTACCAAATTTTCAT 2021230 Query 133292 TGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGT 133351 | || || || || |||||| |||||||| | |||||| | ||||| | |||| Sbjct 2021229 TTACAATACCATCCGAGGCGGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGT 2021170 Query 133352 TGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCC 133411 |||| | | || |||| || |||||||| | || ||||| || ||||||| Sbjct 2021169 TGTCAGTAAGTCGTGCCCAATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCC 2021110 Query 133412 AAAACGACGCCTCGGC 133427 |||| ||||| || || Sbjct 2021109 AAAAAGACGCTTCTGC 2021094 >seq145 Length=1338480 Score = 120 bits (132), Expect = 3e-22 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| |||||||| || |||||||| | || ||||| || | Sbjct 899038 AATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCTC 898979 Query 38303 CGACAG---CGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || | || ||| |||| | |||||| | || ||||| || |||||| |||| Sbjct 898978 GGATACTATCGAGCATG---TTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCCCCCGA 898922 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||| || | |||| |||||| ||||| ||||| || | || || | ||||| Sbjct 898921 TCAACAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCGTACTTTAGCTGACTA 898862 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||||||||| | || | || || ||||||||| | ||||| || Sbjct 898861 TAATATCCAAAAGGAGTCTACCTTACACTTAGTGCTGCGTCTTAGAGGTGG 898811 >seq1310 Length=3030561 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || |||||||| || || || ||||| || || || || |||||||| | || |||||| Sbjct 644975 AACAAAATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGAG 645034 Query 38298 GCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 | | |||| | | ||| | |||| ||||||| |||||||| || || || | Sbjct 645035 CCATCTGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCA 645094 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 || ||||| || | || | ||| |||||||| |||| || | ||||| | ||| Sbjct 645095 GATCAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGAT 645154 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||||||||| | || || || |||||| ||||| || | || || Sbjct 645155 TACAATATCCAAAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTGCGTGGTGG 645207 >seq454 Length=983520 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | |||||||| ||||||||| | || ||||| | | Sbjct 253736 ATGCAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCA 253677 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||||| || || || || | || ||| Sbjct 253676 GATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGATCAA 253617 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| || || |||||||| || | || || | |||||||||| Sbjct 253616 CAGCGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATGGACGTACATTATCCGACTACAAC 253557 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || ||||||||||| ||| Sbjct 253556 ATCCAAAAGGAATCTACCCTCCATTTGGTGCTACGT 253521 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || |||||||||||||| | || ||||| | | Sbjct 254903 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTCGAACCATCA 254844 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| || || || || |||||| | || ||| Sbjct 254843 GATACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 254784 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| || |||||||| ||||| |||| ||||| | ||||||||| Sbjct 254783 CAACGTTTGATTTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAAC 254724 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || || |||||||| |||||||| | || || Sbjct 254723 ATCCAAAAGGAGTCTACCCTTCATTTGGTATTGCGTTTGCGCGGTGG 254677 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || |||||||||||||| | || || || | | Sbjct 254675 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAACCATCA 254616 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||||| || || ||||| | || ||| Sbjct 254615 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 254556 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || ||||| ||||| || || | |||||| | |||||||||| Sbjct 254555 CAACGTTTGATCTTTGCCGGCAAGCAGCTAGAAGATGGACGCACCTTGTCCGACTACAAC 254496 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| | || || |||||||| |||||||| | || ||| Sbjct 254495 ATCCAAAAGGAATCTACTCTCCATTTGGTCTTGCGTTTGCGTGGTGGC 254448 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || ||||||||||||||| | || || ||| | | Sbjct 254447 ATGCAAATTTTCGTTAAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGAGCCATCT 254388 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | ||||||| ||||| || || |||||| | || ||| Sbjct 254387 GATACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAAGGTATTCCCCCAGATCAA 254328 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || ||||| ||| |||| || | ||||| | ||||||||| Sbjct 254327 CAACGTTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGACGCACTTTGTCTGACTACAAC 254268 Query 38424 ATCCAAAAGGAA 38435 |||||||| ||| Sbjct 254267 ATCCAAAAAGAA 254256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500161508599040