Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq454 138 3e-27 seq1310 136 9e-27 seq145 132 1e-25 >seq454 Length=983520 Score = 138 bits (152), Expect = 3e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 194947 GACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCG 195006 || |||||||| || ||||| || | | ||| | |||||||| | |||||| || || Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313 Query 195007 AAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACG 195066 ||||| | |||||||| ||||| ||||| ||||| |||||||| ||||| ||| || Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373 Query 195067 TTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126 ||||||||||| || || || ||||| | ||| | || || || ||||||||||| Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433 Query 195127 ACGAACACTTGCAT 195140 ||||| | |||||| Sbjct 254434 ACGAAAATTTGCAT 254447 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || || ||||| || ||||| |||| | || | |||||||| |||||| Sbjct 253534 TGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGTCCATCTTCCAGCTGC 253593 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| ||||| || | || ||||| |||||||| || ||||| |||||||| || || Sbjct 253594 TTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTGTCTTGGATCTTG 253653 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || ||||| ||||| || || ||| ||||| | ||| | ||||| || ||| Sbjct 253654 GCCTTCACATTCTCGATGGTATCTGATGGTTCGACTTCCAAGGTGATGGTCTTGCCCGTC 253713 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||| | |||||| Sbjct 253714 AAAGTCTTAACGAAAATTTGCAT 253736 Score = 127 bits (140), Expect = 5e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 || ||||| || || ||||| || ||||| |||| |||| || | |||||||| ||||| Sbjct 254473 TGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAG-GTGCGTCCATCTTCTAGCTG 254531 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | |||||||| ||||||||||| ||||| ||||| || || || Sbjct 254532 CTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTT 254591 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||| ||||| || || ||| || || | || | || || || || Sbjct 254592 GGCCTTCACATTCTCGATGGTATCTGATGGTTCAACCTCCAAAGTGATGGTTTTGCCGGT 254651 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | |||||| Sbjct 254652 CAAGGTCTTAACGAAGATTTGCAT 254675 Score = 120 bits (132), Expect = 7e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 194959 ATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGT 195018 || |||||||||| | || | |||||||| | ||||||||| ||||| || | || Sbjct 255741 ATGTTGTAATCGGATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGC 255800 Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 ||||| ||||| ||||| |||||||||||||| || || ||| || || || ||||| Sbjct 255801 TGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGGTA 255860 Query 195079 TCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGC 195138 || || |||||| || || |||| ||||| || || | || || ||||| | |||| Sbjct 255861 TCAGATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGC 255920 Query 195139 ATTT 195142 |||| Sbjct 255921 ATTT 255924 >seq1310 Length=3030561 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||| || ||||| ||||| ||||||||||||| | ||| | ||||| Sbjct 645193 CAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACCATC 645134 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || || || |||||||| | |||||||| ||||| || || ||||||||||| Sbjct 645133 TTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTC 645074 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| ||||| ||||| || || |||||||| || || || || | || | || Sbjct 645073 TTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTGATGGT 645014 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| || |||| ||||| || || | ||||||| Sbjct 645013 CTTACCAGTCAGTGTTTTGACAAAAATCTGCATTT 644979 >seq145 Length=1338480 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| ||||| ||||| || || || | ||| | |||||||| || || || || Sbjct 898841 GTAGACTCCTTTTGGATATTATAGTCAGCTAAAGTACGACCATCTTCCAGTTGTTTTCCC 898900 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | |||||||| || || ||||| |||||||| |||||||||||| ||| Sbjct 898901 GCGAAAATTAAACGTTGTTGATCGGGGGGAATACCTTCTTTATCTTGAATTTTTGCCTTA 898960 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || | ||| || || ||||| ||| || ||||| || | ||||| || || | ||| Sbjct 898961 ACATGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTT 899020 Query 195124 TTTACGAACACTTGCATT 195141 || ||||| | ||||||| Sbjct 899021 TTCACGAAAATTTGCATT 899038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109455927289202