Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq454 138 3e-27
seq1310 136 9e-27
seq145 132 1e-25
>seq454
Length=983520
Score = 138 bits (152), Expect = 3e-27
Identities = 147/194 (76%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 194947 GACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCG 195006
|| |||||||| || ||||| || | | ||| | |||||||| | |||||| || ||
Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313
Query 195007 AAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACG 195066
||||| | |||||||| ||||| ||||| ||||| |||||||| ||||| ||| ||
Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373
Query 195067 TTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126
||||||||||| || || || ||||| | ||| | || || || |||||||||||
Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433
Query 195127 ACGAACACTTGCAT 195140
||||| | ||||||
Sbjct 254434 ACGAAAATTTGCAT 254447
Score = 136 bits (150), Expect = 9e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || || || || ||||| || ||||| |||| | || | |||||||| ||||||
Sbjct 253534 TGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGTCCATCTTCCAGCTGC 253593
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
||||| ||||| || | || ||||| |||||||| || ||||| |||||||| || ||
Sbjct 253594 TTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTGTCTTGGATCTTG 253653
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| || ||||| ||||| || || ||| ||||| | ||| | ||||| || |||
Sbjct 253654 GCCTTCACATTCTCGATGGTATCTGATGGTTCGACTTCCAAGGTGATGGTCTTGCCCGTC 253713
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
||||| || ||||| | ||||||
Sbjct 253714 AAAGTCTTAACGAAAATTTGCAT 253736
Score = 127 bits (140), Expect = 5e-24
Identities = 152/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996
|| ||||| || || ||||| || ||||| |||| |||| || | |||||||| |||||
Sbjct 254473 TGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAG-GTGCGTCCATCTTCTAGCTG 254531
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || || ||||| | |||||||| ||||||||||| ||||| ||||| || || ||
Sbjct 254532 CTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTT 254591
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| || ||||| ||||| || || ||| || || | || | || || || ||
Sbjct 254592 GGCCTTCACATTCTCGATGGTATCTGATGGTTCAACCTCCAAAGTGATGGTTTTGCCGGT 254651
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
||| || || ||||| | ||||||
Sbjct 254652 CAAGGTCTTAACGAAGATTTGCAT 254675
Score = 120 bits (132), Expect = 7e-22
Identities = 137/184 (74%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 194959 ATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGT 195018
|| |||||||||| | || | |||||||| | ||||||||| ||||| || | ||
Sbjct 255741 ATGTTGTAATCGGATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGC 255800
Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078
||||| ||||| ||||| |||||||||||||| || || ||| || || || |||||
Sbjct 255801 TGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGGTA 255860
Query 195079 TCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGC 195138
|| || |||||| || || |||| ||||| || || | || || ||||| | ||||
Sbjct 255861 TCAGATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGC 255920
Query 195139 ATTT 195142
||||
Sbjct 255921 ATTT 255924
>seq1310
Length=3030561
Score = 136 bits (150), Expect = 9e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
||| || | |||||| || ||||| ||||| ||||||||||||| | ||| | |||||
Sbjct 645193 CAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACCATC 645134
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
||| | || || || |||||||| | |||||||| ||||| || || |||||||||||
Sbjct 645133 TTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTC 645074
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
||| ||||| ||||| || || |||||||| || || || || | || | ||
Sbjct 645073 TTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTGATGGT 645014
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
||| || |||| ||||| || || | |||||||
Sbjct 645013 CTTACCAGTCAGTGTTTTGACAAAAATCTGCATTT 644979
>seq145
Length=1338480
Score = 132 bits (146), Expect = 1e-25
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003
|| ||||| ||||| ||||| || || || | ||| | |||||||| || || || ||
Sbjct 898841 GTAGACTCCTTTTGGATATTATAGTCAGCTAAAGTACGACCATCTTCCAGTTGTTTTCCC 898900
Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063
||||| || | |||||||| || || ||||| |||||||| |||||||||||| |||
Sbjct 898901 GCGAAAATTAAACGTTGTTGATCGGGGGGAATACCTTCTTTATCTTGAATTTTTGCCTTA 898960
Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123
|| | ||| || || ||||| ||| || ||||| || | ||||| || || | |||
Sbjct 898961 ACATGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTT 899020
Query 195124 TTTACGAACACTTGCATT 195141
|| ||||| | |||||||
Sbjct 899021 TTCACGAAAATTTGCATT 899038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109455927289202
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |