Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1762 493 1e-134 seq925 309 3e-79 >seq1762 Length=809008 Score = 493 bits (546), Expect = 1e-134 Identities = 1218/1843 (66%), Gaps = 28/1843 (2%) Strand=Plus/Minus Query 47003 CGCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAA 47062 ||||| ||||| || ||||||||||| || || ||||||||| |||| ||||| || Sbjct 695451 CGCTGGCTTTGTGCGCAAATAATACATGCCGGTTTTTAAACCTGCTTTCCAACCATAAAA 695392 Query 47063 ATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACT 47122 ||| ||| ||| | ||| ||| ||||||||| | || ||||||| |||||||| Sbjct 695391 ATGTATAGAAGTAAGTTTGCCGTAATTAGGTTCTGCTACGTGTATATTAAAGGATTGACT 695332 Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 || || ||||| ||||| | |||||| ||||| | || | || | ||||| Sbjct 695331 TTGGTCGATAAAGGCACCACGATCAGCAGCCATTTTTATGGAAGTTTTTACCGAAATCTC 695272 Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA--GATT-AGTATTTTGAATAGA 47239 ||| || |||||||| | || |||| || || | |||| | | ||||| || || Sbjct 695271 CCAAACGGTTTTATACAGTTCGCGTATGTTTTGGGGTATAGATTCAATGTTTTGTATTGA 695212 Query 47240 TCCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaa 47299 || | | | ||||||| ||||| | |||| ||| | |||||| || Sbjct 695211 ACCACGGCTAGTGATAATTTGATTTTTCATATCATCATCCCATAAGCCCAATTCAGT-AA 695153 Query 47300 tgtttttaaA-AGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTAT 47358 || || | |||| | || |||| ||||| || || || || || | || ||| Sbjct 695152 GGTCACGCAACAAATGATGGTTTACAACCTGAAACTCACCGGAAAGCACACGGCGAGTAT 695093 Query 47359 ATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATG 47418 | ||||| || || || || | |||||||||||| || | ||||| || ||||| | Sbjct 695092 AAATATTGGAGGTGTACGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAAG 695033 Query 47419 CTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNN 47478 | || ||||||| ||||| || ||| || | ||| |||| ||| | || | Sbjct 695032 CGGTTGGCATGGGTGCAAGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCTT 694973 Query 47479 NNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAA 47538 |||||| ||| || || | || || ||| | |||||| || | || Sbjct 694972 TCAACTCAGTCCAATTCCATAGTTCAGTCGGCTTTTTATCCCACATATCATACTGTAAAA 694913 Query 47539 TTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTT 47598 | ||||| || | ||| ||||| | ||| |||| ||||| || || || ||| | || Sbjct 694912 TACCTTTGCTAACCGGTGAACCTTCATAAGTTTCGTAAGGCCCAAATTTTTCAGCCAATT 694853 Query 47599 CACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTA----GA 47654 | || || ||||| || |||| ||| || |||||||||||||||| | || | || Sbjct 694852 CGCAGCTGGCTTCTAAAGCACCATAGTAAATTGTTTCAAATATTTGTTGATTCAATAGGA 694793 Query 47655 TTCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCT 47714 | |||| ||| | | ||| ||||||| |||| ||||| || ||| Sbjct 694792 ATGCTTG-TTC-GCT--TTCGTAAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCT 694737 Query 47715 TGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGA 47774 || ||||||||||| || || | ||| | |||||| || ||||| || |||||| Sbjct 694736 TGTACACCAATACCGATCGGACGATGCCTGAAATTAGATTTCTTGGCTTCAGGCAATGGA 694677 Query 47775 TATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTT 47834 || | ||||||||| || |||||||||| | | ||| | Sbjct 694676 TAGTGGTTTATATCAATGATTTTATTTAAATTCCGCGTCACGGTCTTAGTGACTTCCTTG 694617 Query 47835 AATTTATTAAAATCAAACTTGTTATTTA---TAACAAACCTATTAAGTGCTATAGATGCT 47891 | |||||||| | || || | | |||||||| |||| || || || |||||| Sbjct 694616 AGGCGTTTAAAATCGTATTTTTTGTCTGGTGTAACAAACATATTGAGGGCAATCGATGCT 694557 Query 47892 AGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTA 47951 | ||| |||||||||||||| | || | ||| | | ||||| | |||| |||| Sbjct 694556 AAATTGCATACAGCTACCTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTA 694497 Query 47952 CCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAA 48011 | ||||| || || || | ||| || |||||| | | ||||| || ||||| || Sbjct 694496 CTGCATTTAATTGTGCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATAT 694437 Query 48012 AGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTA 48071 | |||| | ||||| || || || | ||| ||||| || || || ||||| | | Sbjct 694436 AACATATACGGTGTGCCCGTCTCCACCTGCGATTCTATAATGGAAAACCAAAGGCTT-TG 694378 Query 48072 GCCTTTATAACAGCTC--TAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAA 48129 | ||||| | || |||| || ||||| ||||| || |||||||| || | Sbjct 694377 GGCTTTA-ACTTTCTTATTAGCACGTCCTTCTTGTTCATATTTTGTGTATAACTTTTCGA 694319 Query 48130 ATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAAT 48189 |||| || || | || | | ||| || ||||| | || |||||||| |||||||||| Sbjct 694318 ATTCTTCACCCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCAAT 694259 Query 48190 CCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAAT 48249 |||||| || || | ||||||||| || |||||||| | ||| |||||||| Sbjct 694258 CCTCATTTGCTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAAT 694199 Query 48250 CCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT-TTTAAGTTCAAGAAAGTCCATTATA 48308 | |||| || | || || || || |||| | ||||| | ||| ||| || | ||| Sbjct 694198 CTCTAGCTCGATGCTCCTCTTTTCCGGTATTTTTCTTTAAATCCAA-AAATTCAAAAATA 694140 Query 48309 TCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGA 48368 ||||| ||||| || || || ||||| || | | |||||||||||| || |||||| Sbjct 694139 TCAGCGTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGA 694080 Query 48369 TCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATA 48428 || | ||| | || || || |||| | |||||||| || | ||||||||| | Sbjct 694079 TCCACATAACGTGCTACGTTATTGAAAACACGCAACATTGGTACCAAGCCATTTGATGTG 694020 Query 48429 CCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA--ATTGAAATACCTA 48486 ||||| || |||| ||| || | || |||| | |||| | | ||| || || | Sbjct 694019 CCATTCGTGCCCGCAATCGAAGTGCCTTTAGCGCGTATACAATGAACATTTAA--GCCAA 693962 Query 48487 TACCACCTGCCATTTTAGATATTAGAGCACACCG-TTTAAGGGTATCATAAATTCCTTCT 48545 ||||||| || |||||| || | ||||| | | | | | | | | || || || Sbjct 693961 TACCACCAGCAGATTTAGAAATCAATGCACATTGATGTGCCGATGT-AAATATGCCATCA 693903 Query 48546 ATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCT 48605 || || || | |||| ||||||||||||| ||| | ||| || || || | Sbjct 693902 ATGGAGTCGTCGACCATAGTTAATAGAAAACATGAAGATAATTGTGGCTGTTTGGTAGCG 693843 Query 48606 GAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTT 48665 | | ||| | |||||| || ||||| |||| | ||||| | ||| || ||||| Sbjct 693842 GCAGCAAAGAGTGTTGGTGAGGCATGTGTAAAGTAACGTTCTGAAAGCAAATTGTATGTG 693783 Query 48666 TCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATAT 48725 || || | | |||||||||| ||||||||| || | ||||||||||||||||| Sbjct 693782 TCGATTGCCGCATCTATATCCTCACCATGTATACCAATGGCTACACGCATTAACATATGC 693723 Query 48726 TGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTA 48785 || || | |||||||||||| ||| | || | | ||| || ||| | || ||| Sbjct 693722 TGTGGCCGTTCAACAATTTTACCATTCAACTTGAGTAAATAGGAACGTTCAAGAGTCTTA 693663 Query 48786 AAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTG 48828 || || ||||| || || || || ||||| |||||||| Sbjct 693662 AACCCGAAATAATTATAACCGAAATCACGATCATAAATAATTG 693620 >seq925 Length=3171676 Score = 309 bits (342), Expect = 3e-79 Identities = 495/705 (70%), Gaps = 12/705 (2%) Strand=Plus/Minus Query 18795 ATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAAC 18854 ||| ||||| |||| |||||| ||| | | ||||||||| || |||| || || Sbjct 2021792 ATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAGGTTTAC 2021733 Query 18855 AGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATAC 18914 ||||| ||| ||||| | ||||||||||| || || ||||| || ||||| || | | Sbjct 2021732 AGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGAT---TTC 2021676 Query 18915 AACTCTATCTTCATTAGGAGGGTAT----AGAAGATGTTTAAACATCAAACATGCAAAAT 18970 || || ||| | | |||| | | | ||||| ||||||||||| || |||| Sbjct 2021675 AATAATACGTTCCCT-GCTGGGTTTCTGTATCAAATGTTGGAACATCAAACACGCGAAAT 2021617 Query 18971 CACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCA 19030 ||||||||| |||||||| | ||||| ||||| || |||||||| || ||||| | Sbjct 2021616 CACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCATTA 2021557 Query 19031 GTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTA 19090 || | ||| || | ||| || || || ||||| || ||||||||| ||||| | Sbjct 2021556 AACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCTTCAA 2021497 Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCA 19150 | || ||||| |||| || | ||| ||| | | ||| || | |||||| || Sbjct 2021496 CAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAAGAAATCCAAGCCA 2021437 Query 19151 GTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACA 19210 | |||||||||||||| || ||| ||||| ||||| || | ||| || | ||| Sbjct 2021436 GCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGCATTGAACAAATAGT 2021377 Query 19211 TACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAA 19270 | | | || |||| ||||| || || |||| || ||||||||||| || | Sbjct 2021376 CTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAGTGCA 2021317 Query 19271 TATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCAC 19330 |||||| ||||| || ||||| ||||| ||||| | || || |||| || ||||| Sbjct 2021316 CATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACTTCTT 2021257 Query 19331 TACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTA 19390 || || | ||| |||||||||||||| || || ||||| || |||||||| |||| Sbjct 2021256 GACTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGGCTA 2021197 Query 19391 ATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT--CCAATCATTAATATC 19448 |||| || || ||||||| |||| | || ||| || | |||||||| | ||| Sbjct 2021196 ATACGTGCGAAACAAAATGTCTTTCGT-TGTCAGTAA-GTCGTGCCCAATCATCTAAATC 2021139 Query 19449 TTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 || ||||||||||| ||||| || ||||||||||| || ||||| Sbjct 2021138 CTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCTTCTGC 2021094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562096110393840