Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 493 1e-134
seq925 309 3e-79
>seq1762
Length=809008
Score = 493 bits (546), Expect = 1e-134
Identities = 1218/1843 (66%), Gaps = 28/1843 (2%)
Strand=Plus/Minus
Query 47003 CGCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAA 47062
||||| ||||| || ||||||||||| || || ||||||||| |||| ||||| ||
Sbjct 695451 CGCTGGCTTTGTGCGCAAATAATACATGCCGGTTTTTAAACCTGCTTTCCAACCATAAAA 695392
Query 47063 ATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACT 47122
||| ||| ||| | ||| ||| ||||||||| | || ||||||| ||||||||
Sbjct 695391 ATGTATAGAAGTAAGTTTGCCGTAATTAGGTTCTGCTACGTGTATATTAAAGGATTGACT 695332
Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182
|| || ||||| ||||| | |||||| ||||| | || | || | |||||
Sbjct 695331 TTGGTCGATAAAGGCACCACGATCAGCAGCCATTTTTATGGAAGTTTTTACCGAAATCTC 695272
Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA--GATT-AGTATTTTGAATAGA 47239
||| || |||||||| | || |||| || || | |||| | | ||||| || ||
Sbjct 695271 CCAAACGGTTTTATACAGTTCGCGTATGTTTTGGGGTATAGATTCAATGTTTTGTATTGA 695212
Query 47240 TCCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaa 47299
|| | | | ||||||| ||||| | |||| ||| | |||||| ||
Sbjct 695211 ACCACGGCTAGTGATAATTTGATTTTTCATATCATCATCCCATAAGCCCAATTCAGT-AA 695153
Query 47300 tgtttttaaA-AGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTAT 47358
|| || | |||| | || |||| ||||| || || || || || | || |||
Sbjct 695152 GGTCACGCAACAAATGATGGTTTACAACCTGAAACTCACCGGAAAGCACACGGCGAGTAT 695093
Query 47359 ATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATG 47418
| ||||| || || || || | |||||||||||| || | ||||| || ||||| |
Sbjct 695092 AAATATTGGAGGTGTACGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAAG 695033
Query 47419 CTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNN 47478
| || ||||||| ||||| || ||| || | ||| |||| ||| | || |
Sbjct 695032 CGGTTGGCATGGGTGCAAGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCTT 694973
Query 47479 NNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAA 47538
|||||| ||| || || | || || ||| | |||||| || | ||
Sbjct 694972 TCAACTCAGTCCAATTCCATAGTTCAGTCGGCTTTTTATCCCACATATCATACTGTAAAA 694913
Query 47539 TTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTT 47598
| ||||| || | ||| ||||| | ||| |||| ||||| || || || ||| | ||
Sbjct 694912 TACCTTTGCTAACCGGTGAACCTTCATAAGTTTCGTAAGGCCCAAATTTTTCAGCCAATT 694853
Query 47599 CACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTA----GA 47654
| || || ||||| || |||| ||| || |||||||||||||||| | || | ||
Sbjct 694852 CGCAGCTGGCTTCTAAAGCACCATAGTAAATTGTTTCAAATATTTGTTGATTCAATAGGA 694793
Query 47655 TTCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCT 47714
| |||| ||| | | ||| ||||||| |||| ||||| || |||
Sbjct 694792 ATGCTTG-TTC-GCT--TTCGTAAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCT 694737
Query 47715 TGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGA 47774
|| ||||||||||| || || | ||| | |||||| || ||||| || ||||||
Sbjct 694736 TGTACACCAATACCGATCGGACGATGCCTGAAATTAGATTTCTTGGCTTCAGGCAATGGA 694677
Query 47775 TATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTT 47834
|| | ||||||||| || |||||||||| | | ||| |
Sbjct 694676 TAGTGGTTTATATCAATGATTTTATTTAAATTCCGCGTCACGGTCTTAGTGACTTCCTTG 694617
Query 47835 AATTTATTAAAATCAAACTTGTTATTTA---TAACAAACCTATTAAGTGCTATAGATGCT 47891
| |||||||| | || || | | |||||||| |||| || || || ||||||
Sbjct 694616 AGGCGTTTAAAATCGTATTTTTTGTCTGGTGTAACAAACATATTGAGGGCAATCGATGCT 694557
Query 47892 AGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTA 47951
| ||| |||||||||||||| | || | ||| | | ||||| | |||| ||||
Sbjct 694556 AAATTGCATACAGCTACCTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTA 694497
Query 47952 CCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAA 48011
| ||||| || || || | ||| || |||||| | | ||||| || ||||| ||
Sbjct 694496 CTGCATTTAATTGTGCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATAT 694437
Query 48012 AGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTA 48071
| |||| | ||||| || || || | ||| ||||| || || || ||||| | |
Sbjct 694436 AACATATACGGTGTGCCCGTCTCCACCTGCGATTCTATAATGGAAAACCAAAGGCTT-TG 694378
Query 48072 GCCTTTATAACAGCTC--TAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAA 48129
| ||||| | || |||| || ||||| ||||| || |||||||| || |
Sbjct 694377 GGCTTTA-ACTTTCTTATTAGCACGTCCTTCTTGTTCATATTTTGTGTATAACTTTTCGA 694319
Query 48130 ATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAAT 48189
|||| || || | || | | ||| || ||||| | || |||||||| ||||||||||
Sbjct 694318 ATTCTTCACCCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCAAT 694259
Query 48190 CCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAAT 48249
|||||| || || | ||||||||| || |||||||| | ||| ||||||||
Sbjct 694258 CCTCATTTGCTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAAT 694199
Query 48250 CCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT-TTTAAGTTCAAGAAAGTCCATTATA 48308
| |||| || | || || || || |||| | ||||| | ||| ||| || | |||
Sbjct 694198 CTCTAGCTCGATGCTCCTCTTTTCCGGTATTTTTCTTTAAATCCAA-AAATTCAAAAATA 694140
Query 48309 TCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGA 48368
||||| ||||| || || || ||||| || | | |||||||||||| || ||||||
Sbjct 694139 TCAGCGTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGA 694080
Query 48369 TCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATA 48428
|| | ||| | || || || |||| | |||||||| || | ||||||||| |
Sbjct 694079 TCCACATAACGTGCTACGTTATTGAAAACACGCAACATTGGTACCAAGCCATTTGATGTG 694020
Query 48429 CCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA--ATTGAAATACCTA 48486
||||| || |||| ||| || | || |||| | |||| | | ||| || || |
Sbjct 694019 CCATTCGTGCCCGCAATCGAAGTGCCTTTAGCGCGTATACAATGAACATTTAA--GCCAA 693962
Query 48487 TACCACCTGCCATTTTAGATATTAGAGCACACCG-TTTAAGGGTATCATAAATTCCTTCT 48545
||||||| || |||||| || | ||||| | | | | | | | | || || ||
Sbjct 693961 TACCACCAGCAGATTTAGAAATCAATGCACATTGATGTGCCGATGT-AAATATGCCATCA 693903
Query 48546 ATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCT 48605
|| || || | |||| ||||||||||||| ||| | ||| || || || |
Sbjct 693902 ATGGAGTCGTCGACCATAGTTAATAGAAAACATGAAGATAATTGTGGCTGTTTGGTAGCG 693843
Query 48606 GAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTT 48665
| | ||| | |||||| || ||||| |||| | ||||| | ||| || |||||
Sbjct 693842 GCAGCAAAGAGTGTTGGTGAGGCATGTGTAAAGTAACGTTCTGAAAGCAAATTGTATGTG 693783
Query 48666 TCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATAT 48725
|| || | | |||||||||| ||||||||| || | |||||||||||||||||
Sbjct 693782 TCGATTGCCGCATCTATATCCTCACCATGTATACCAATGGCTACACGCATTAACATATGC 693723
Query 48726 TGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTA 48785
|| || | |||||||||||| ||| | || | | ||| || ||| | || |||
Sbjct 693722 TGTGGCCGTTCAACAATTTTACCATTCAACTTGAGTAAATAGGAACGTTCAAGAGTCTTA 693663
Query 48786 AAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTG 48828
|| || ||||| || || || || ||||| ||||||||
Sbjct 693662 AACCCGAAATAATTATAACCGAAATCACGATCATAAATAATTG 693620
>seq925
Length=3171676
Score = 309 bits (342), Expect = 3e-79
Identities = 495/705 (70%), Gaps = 12/705 (2%)
Strand=Plus/Minus
Query 18795 ATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAAC 18854
||| ||||| |||| |||||| ||| | | ||||||||| || |||| || ||
Sbjct 2021792 ATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAGGTTTAC 2021733
Query 18855 AGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATAC 18914
||||| ||| ||||| | ||||||||||| || || ||||| || ||||| || | |
Sbjct 2021732 AGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGAT---TTC 2021676
Query 18915 AACTCTATCTTCATTAGGAGGGTAT----AGAAGATGTTTAAACATCAAACATGCAAAAT 18970
|| || ||| | | |||| | | | ||||| ||||||||||| || ||||
Sbjct 2021675 AATAATACGTTCCCT-GCTGGGTTTCTGTATCAAATGTTGGAACATCAAACACGCGAAAT 2021617
Query 18971 CACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCA 19030
||||||||| |||||||| | ||||| ||||| || |||||||| || ||||| |
Sbjct 2021616 CACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCATTA 2021557
Query 19031 GTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTA 19090
|| | ||| || | ||| || || || ||||| || ||||||||| ||||| |
Sbjct 2021556 AACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCTTCAA 2021497
Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCA 19150
| || ||||| |||| || | ||| ||| | | ||| || | |||||| ||
Sbjct 2021496 CAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAAGAAATCCAAGCCA 2021437
Query 19151 GTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACA 19210
| |||||||||||||| || ||| ||||| ||||| || | ||| || | |||
Sbjct 2021436 GCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGCATTGAACAAATAGT 2021377
Query 19211 TACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAA 19270
| | | || |||| ||||| || || |||| || ||||||||||| || |
Sbjct 2021376 CTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAGTGCA 2021317
Query 19271 TATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCAC 19330
|||||| ||||| || ||||| ||||| ||||| | || || |||| || |||||
Sbjct 2021316 CATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACTTCTT 2021257
Query 19331 TACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTA 19390
|| || | ||| |||||||||||||| || || ||||| || |||||||| ||||
Sbjct 2021256 GACTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGGCTA 2021197
Query 19391 ATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT--CCAATCATTAATATC 19448
|||| || || ||||||| |||| | || ||| || | |||||||| | |||
Sbjct 2021196 ATACGTGCGAAACAAAATGTCTTTCGT-TGTCAGTAA-GTCGTGCCCAATCATCTAAATC 2021139
Query 19449 TTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493
|| ||||||||||| ||||| || ||||||||||| || |||||
Sbjct 2021138 CTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCTTCTGC 2021094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562096110393840
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