Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq925 257 2e-63 >seq925 Length=3171676 Score = 257 bits (284), Expect = 2e-63 Identities = 481/694 (69%), Gaps = 12/694 (2%) Strand=Plus/Minus Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069 ||| || || ||||| || || | |||| || | | || ||||||||||| ||||| Sbjct 2021792 ATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAGGTTTAC 2021733 Query 37070 TGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAA 37128 || | ||| ||| | ||||| | || ||| ||| | || || || | || | || Sbjct 2021732 AGGTAATGCGTCTGTTAAGAATTC-TTGTTCAATTTTAACTGCTTCAGATATGATTTCAA 2021674 Query 37129 CAATAACTTCTTCAGTTGGGGGA-TATTTTAAATATTTAAACAATAAACATGCAAAATCA 37187 |||| ||| | | |||| | | | |||| || |||| ||||| || |||||| Sbjct 2021673 TAATACGTTCC-CTGCTGGGTTTCTGTATCAAATGTTGGAACATCAAACACGCGAAATCA 2021615 Query 37188 CAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAA 37247 ||||||||||| || || | ||||| ||||| || || ||||| || ||||||||| Sbjct 2021614 CAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCATTAAA 2021555 Query 37248 CCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACT 37307 || | ||| |||| |||||| |||| ||||||| || |||||| || |||||||| Sbjct 2021554 CCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCTTCAACA 2021495 Query 37308 GCTGCAAATGCTACAAGACGTGTACCGAAAGTTG--AACTATAATCAGAAATCCAttttt 37365 || |||||||| | | |||| ||| || ||| ||| | | ||||||||| Sbjct 2021494 GCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGA--AGAAATCCAAGCCA 2021437 Query 37366 ttGTCCAATCTGCCTTTAATTTAACA-CATTCAATTGTTTCAATTGCTTTTAAGAGAAAG 37424 | |||||| ||||| |||||| || | || || |||||||| || || | | || Sbjct 2021436 GCGCCCAATCAGCCTTACGCTTAACAGCAGGC-ATCGTCTCAATTGCATTGAACAAATAG 2021378 Query 37425 tttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGA 37484 | | ||| || | || | ||||| || ||||||| || ||||||||||| ||||| Sbjct 2021377 TCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAGTGC 2021318 Query 37485 ATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCG 37544 | |||||| ||||| || |||||||| || ||||||| || || | || |||||| || Sbjct 2021317 ACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACTTCT 2021258 Query 37545 TTA-AAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGC 37603 | | |||| | || | || |||||||| || || ||||| || ||||| || || Sbjct 2021257 TGACTGAAACGTTCTA-CCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGGC 2021199 Query 37604 AAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATC 37663 | || | | |||||||||||| | | | | | | |||||||| | ||| Sbjct 2021198 TAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCGTGCCCAATCATCTAAATC 2021139 Query 37664 TTTTGATAAATCAACTTCATCAACGGTCCAAAAA 37697 || |||||||| || || || |||||||||||| Sbjct 2021138 CTTGGATAAATCTACCTCTTCCACGGTCCAAAAA 2021105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592303428448240