Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq1310 150 1e-31
seq145 145 6e-30
seq454 136 3e-27
seq1509 109 4e-19
>seq1310
Length=3030561
Score = 150 bits (166), Expect = 1e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| || || || |||||||| || || ||||| ||||||||||||| | ||| | |
Sbjct 645196 ACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACC 645137
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| |||||||| || || || || |||||||| |||||||| || || || ||||||||
Sbjct 645136 ATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTT 645077
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
||||| ||||| ||| ||| |||| | |||||||| | || || || | |||||
Sbjct 645076 GTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTGAT 645017
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || || | ||||| ||||| ||||||||
Sbjct 645016 GGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981
>seq145
Length=1338480
Score = 145 bits (160), Expect = 6e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301
||| ||||| | ||| | ||||| || | |||||| || ||||| ||||| || || ||
Sbjct 898810 TCCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGC 898869
Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361
| ||| | |||| |||| ||| || || || || || ||||| ||||||||||| ||
Sbjct 898870 TAAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGG 898929
Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421
||| ||||||||||||||||||||| || ||| || | ||| || || | ||| ||
Sbjct 898930 AATACCTTCTTTATCTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGAC 898989
Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||||||| || || || || | ||||| || || || |||||
Sbjct 898990 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037
>seq454
Length=983520
Score = 136 bits (150), Expect = 3e-27
Identities = 147/195 (75%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 101276 GATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCA 101335
||||||||||| || ||||| || | | ||| | |||| ||||| ||||| || |||
Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313
Query 101336 AATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACA 101395
|| |||||||| |||||||| || ||||| ||||| || ||||| ||||| || |||
Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373
Query 101396 ATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTT 101455
| || | || ||||| | || ||||| | |||| ||||||||||| ||||||||
Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433
Query 101456 ACAAATATCTGCATG 101470
|| || || ||||||
Sbjct 254434 ACGAAAATTTGCATG 254448
Score = 136 bits (150), Expect = 3e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311
||||| || || |||||||||||||| || ||||| || ||||| || | | ||| |
Sbjct 254686 AAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGT 254745
Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371
| || |||| ||| || || ||||| |||||||| |||||||| || ||||| |||||
Sbjct 254746 CCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCTTCC 254805
Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431
|||||||| || || || ||| | || | || || || | ||| || || | ||||
Sbjct 254806 TTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGACCTCCAAAGTG 254865
Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
| ||||||||||| || || || || || || |||||
Sbjct 254866 ATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903
Score = 131 bits (144), Expect = 1e-25
Identities = 184/256 (72%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 101215 TCATTTT-TATTTAATATACTAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGG 101273
||||||| ||||||| | |||| ||||| | | ||||| || ||||| ||||
Sbjct 253483 TCATTTTCTATTTAAATT--TAGAATGCGCCTCCGCGAAGACGTAGCACCAAATGGAGGG 253540
Query 101274 TAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTG 101333
||||||| ||||| || ||||| |||| | || | |||| |||| |||||||| |
Sbjct 253541 TAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGTCCATCTTCCAGCTGCTTACCAG 253600
Query 101334 CAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTA 101393
| || ||||||||||||||||| || || || ||||| || ||||| || || || |
Sbjct 253601 CGAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTCA 253660
Query 101394 CAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTT 101453
|| | || | || || || | ||| ||||| | |||| || ||||| || ||||| |
Sbjct 253661 CATTCTCGATGGTATCTGATGGTTCGACTTCCAAGGTGATGGTCTTGCCCGTCAAAGTCT 253720
Query 101454 TTACAAATATCTGCAT 101469
| || || || |||||
Sbjct 253721 TAACGAAAATTTGCAT 253736
Score = 123 bits (136), Expect = 2e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311
||||| || || ||||| || |||||||| ||||| || ||||| |||| | || |
Sbjct 254458 AAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGT 254517
Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371
|||| || | ||||| || ||||| |||||||| |||||||| || ||||| |||||
Sbjct 254518 CCATCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCC 254577
Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431
|| || || || || || ||| | || | || || || | ||| || || | ||||
Sbjct 254578 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAACCTCCAAAGTG 254637
Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
| ||||||||||| || || || || || || |||||
Sbjct 254638 ATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254675
Score = 122 bits (134), Expect = 7e-23
Identities = 136/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 101288 ATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGC 101347
|| |||||||||| | || | |||| ||||| |||||||| || || |||||||||
Sbjct 255741 ATGTTGTAATCGGATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGC 255800
Query 101348 TGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTG 101407
|||||||| || ||||| |||||||| ||||| || || || ||| |||| | ||
Sbjct 255801 TGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGGTA 255860
Query 101408 TCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGC 101467
||||| | |||||| || ||||| | || ||||| |||| || || || || || |||
Sbjct 255861 TCAGATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGC 255920
Query 101468 AT 101469
||
Sbjct 255921 AT 255922
>seq1509
Length=4395057
Score = 109 bits (120), Expect = 4e-19
Identities = 131/175 (75%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 13761 CATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGA 13820
|||| || || ||||| || | || | ||||||||| || || |||| || ||| |
Sbjct 622122 CATAGCCATTTGGATCTCGAGCGTCAAGACTGTATTTATCATTCAAATGAATAGCGGTTT 622063
Query 13821 TTAAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCA 13880
|||| ||||| || ||| |||||||| ||||||||||| |||||||| |||| ||
Sbjct 622062 TTAAGGCCACCTCTGGTGAAGATGACCATTCCAATATTTTTTTTGCCCAATACATTCGCA 622003
Query 13881 TATATCCGTGCATTTTGCCTTGCGTTTTAAGC---TGTGTCTGAGCAGCGTTCCA 13932
| |||||||||||||||||| || | || | || |||||||||| |||||
Sbjct 622002 GAAATCCGTGCATTTTGCCTT-CG--TGAACCAATTGCATCTGAGCAGCATTCCA 621951
Score = 87.8 bits (96), Expect = 1e-12
Identities = 118/162 (73%), Gaps = 7/162 (4%)
Strand=Plus/Minus
Query 13742 ATTGACCACATGCAACCGGCATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCG 13801
|||| | |||| ||| |||| || || ||||| || || |||||||| || || |||
Sbjct 619311 ATTGCCTACAT---ACCAACATATCCATTTGGATCTCGACCGTCCAAACTATACTTATCG 619255
Query 13802 TTGAAATATATGGCGTTGATTAAAG--CCACTGTAGGCGAAATAGACCATTCTAATAttt 13859
|| ||| || || | || || || || |||| | ||||||||| | |||||
Sbjct 619254 TTTAAAAGAATAGC--TACTTCCAGTGCCTCTTCTGGCGTAGAAGACCATTCGAGTATTT 619197
Query 13860 ttttAGCCCAATATATTCTCATATATCCGTGCATTTTGCCTT 13901
|||| |||||||| |||| || | |||| |||||||||||||
Sbjct 619196 TTTTGGCCCAATACATTCGCAGAAATCCATGCATTTTGCCTT 619155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396269677664742
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |