Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1310 150 1e-31 seq145 145 6e-30 seq454 136 3e-27 seq1509 109 4e-19 >seq1310 Length=3030561 Score = 150 bits (166), Expect = 1e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || |||||||| || || ||||| ||||||||||||| | ||| | | Sbjct 645196 ACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACC 645137 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| || || || || |||||||| |||||||| || || || |||||||| Sbjct 645136 ATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTT 645077 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| ||| ||| |||| | |||||||| | || || || | ||||| Sbjct 645076 GTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTGAT 645017 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || | ||||| ||||| |||||||| Sbjct 645016 GGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981 >seq145 Length=1338480 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||| ||||| | ||| | ||||| || | |||||| || ||||| ||||| || || || Sbjct 898810 TCCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGC 898869 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | ||| | |||| |||| ||| || || || || || ||||| ||||||||||| || Sbjct 898870 TAAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGG 898929 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 ||| ||||||||||||||||||||| || ||| || | ||| || || | ||| || Sbjct 898930 AATACCTTCTTTATCTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGAC 898989 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || || || | ||||| || || || ||||| Sbjct 898990 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037 >seq454 Length=983520 Score = 136 bits (150), Expect = 3e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 101276 GATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCA 101335 ||||||||||| || ||||| || | | ||| | |||| ||||| ||||| || ||| Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313 Query 101336 AATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACA 101395 || |||||||| |||||||| || ||||| ||||| || ||||| ||||| || ||| Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373 Query 101396 ATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTT 101455 | || | || ||||| | || ||||| | |||| ||||||||||| |||||||| Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433 Query 101456 ACAAATATCTGCATG 101470 || || || |||||| Sbjct 254434 ACGAAAATTTGCATG 254448 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| || || |||||||||||||| || ||||| || ||||| || | | ||| | Sbjct 254686 AAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGT 254745 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 | || |||| ||| || || ||||| |||||||| |||||||| || ||||| ||||| Sbjct 254746 CCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCTTCC 254805 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 |||||||| || || || ||| | || | || || || | ||| || || | |||| Sbjct 254806 TTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGACCTCCAAAGTG 254865 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||||||||| || || || || || || ||||| Sbjct 254866 ATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903 Score = 131 bits (144), Expect = 1e-25 Identities = 184/256 (72%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 101215 TCATTTT-TATTTAATATACTAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGG 101273 ||||||| ||||||| | |||| ||||| | | ||||| || ||||| |||| Sbjct 253483 TCATTTTCTATTTAAATT--TAGAATGCGCCTCCGCGAAGACGTAGCACCAAATGGAGGG 253540 Query 101274 TAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTG 101333 ||||||| ||||| || ||||| |||| | || | |||| |||| |||||||| | Sbjct 253541 TAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGTCCATCTTCCAGCTGCTTACCAG 253600 Query 101334 CAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTA 101393 | || ||||||||||||||||| || || || ||||| || ||||| || || || | Sbjct 253601 CGAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTCA 253660 Query 101394 CAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTT 101453 || | || | || || || | ||| ||||| | |||| || ||||| || ||||| | Sbjct 253661 CATTCTCGATGGTATCTGATGGTTCGACTTCCAAGGTGATGGTCTTGCCCGTCAAAGTCT 253720 Query 101454 TTACAAATATCTGCAT 101469 | || || || ||||| Sbjct 253721 TAACGAAAATTTGCAT 253736 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| || || ||||| || |||||||| ||||| || ||||| |||| | || | Sbjct 254458 AAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGT 254517 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| || | ||||| || ||||| |||||||| |||||||| || ||||| ||||| Sbjct 254518 CCATCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCC 254577 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 || || || || || || ||| | || | || || || | ||| || || | |||| Sbjct 254578 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAACCTCCAAAGTG 254637 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||||||||| || || || || || || ||||| Sbjct 254638 ATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254675 Score = 122 bits (134), Expect = 7e-23 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 101288 ATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGC 101347 || |||||||||| | || | |||| ||||| |||||||| || || ||||||||| Sbjct 255741 ATGTTGTAATCGGATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGC 255800 Query 101348 TGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTG 101407 |||||||| || ||||| |||||||| ||||| || || || ||| |||| | || Sbjct 255801 TGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGGTA 255860 Query 101408 TCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGC 101467 ||||| | |||||| || ||||| | || ||||| |||| || || || || || ||| Sbjct 255861 TCAGATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGC 255920 Query 101468 AT 101469 || Sbjct 255921 AT 255922 >seq1509 Length=4395057 Score = 109 bits (120), Expect = 4e-19 Identities = 131/175 (75%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 13761 CATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGA 13820 |||| || || ||||| || | || | ||||||||| || || |||| || ||| | Sbjct 622122 CATAGCCATTTGGATCTCGAGCGTCAAGACTGTATTTATCATTCAAATGAATAGCGGTTT 622063 Query 13821 TTAAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCA 13880 |||| ||||| || ||| |||||||| ||||||||||| |||||||| |||| || Sbjct 622062 TTAAGGCCACCTCTGGTGAAGATGACCATTCCAATATTTTTTTTGCCCAATACATTCGCA 622003 Query 13881 TATATCCGTGCATTTTGCCTTGCGTTTTAAGC---TGTGTCTGAGCAGCGTTCCA 13932 | |||||||||||||||||| || | || | || |||||||||| ||||| Sbjct 622002 GAAATCCGTGCATTTTGCCTT-CG--TGAACCAATTGCATCTGAGCAGCATTCCA 621951 Score = 87.8 bits (96), Expect = 1e-12 Identities = 118/162 (73%), Gaps = 7/162 (4%) Strand=Plus/Minus Query 13742 ATTGACCACATGCAACCGGCATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCG 13801 |||| | |||| ||| |||| || || ||||| || || |||||||| || || ||| Sbjct 619311 ATTGCCTACAT---ACCAACATATCCATTTGGATCTCGACCGTCCAAACTATACTTATCG 619255 Query 13802 TTGAAATATATGGCGTTGATTAAAG--CCACTGTAGGCGAAATAGACCATTCTAATAttt 13859 || ||| || || | || || || || |||| | ||||||||| | ||||| Sbjct 619254 TTTAAAAGAATAGC--TACTTCCAGTGCCTCTTCTGGCGTAGAAGACCATTCGAGTATTT 619197 Query 13860 ttttAGCCCAATATATTCTCATATATCCGTGCATTTTGCCTT 13901 |||| |||||||| |||| || | |||| ||||||||||||| Sbjct 619196 TTTTGGCCCAATACATTCGCAGAAATCCATGCATTTTGCCTT 619155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396269677664742