Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1310 102 6e-17 seq454 102 6e-17 >seq1310 Length=3030561 Score = 102 bits (112), Expect = 6e-17 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| ||||| ||||||||||| || | | | ||| Sbjct 645198 AGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGA 645139 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || || ||||| || |||| || |||||||| | || | || || Sbjct 645138 CCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCT 645079 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || ||| ||| | | | || || | ||| ||||||| || Sbjct 645078 TTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTG 645019 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGTACGTGTAT 48781 || || || || |||| ||||| |||||||||||||| | ||| ||| ||| Sbjct 645018 ATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT--TTTGTTCGTCTAT 644968 >seq454 Length=983520 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| || ||||| ||||| | | | || | || ||||||||||| |||||||| Sbjct 254257 TCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCAAAG 254316 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||||| | ||||| || |||||||| || || || ||| Sbjct 254317 ATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACATTC 254376 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| || |||| || || ||||| || ||||||||||| || Sbjct 254377 TCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTAACG 254436 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 254437 AAAATTTGCAT 254447 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||||||| || || || ||||| || ||||| || | Sbjct 253508 CGCCTCCGCGAAGACGTAGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGG 253567 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 ||| | || | || |||| ||||||||| || || |||| ||||||||||| | | Sbjct 253568 ATAATGTACGTCCATCTTCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAG 253627 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | || |||||||| ||||| || ||| | | | ||||| | || | Sbjct 253628 GGATACCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGA 253687 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | |||| || || || || ||||||||||| || || ||||| ||||| Sbjct 253688 CTTCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380929215325338