Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq1310 102 6e-17
seq454 102 6e-17
>seq1310
Length=3030561
Score = 102 bits (112), Expect = 6e-17
Identities = 163/233 (70%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||||||||| || || || ||| ||||| ||||||||||| || | | | |||
Sbjct 645198 AGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGA 645139
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||| || || ||||| || |||| || |||||||| | || | || ||
Sbjct 645138 CCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCT 645079
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| || || ||| ||| | | | || || | ||| ||||||| ||
Sbjct 645078 TTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTG 645019
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGTACGTGTAT 48781
|| || || || |||| ||||| |||||||||||||| | ||| ||| |||
Sbjct 645018 ATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT--TTTGTTCGTCTAT 644968
>seq454
Length=983520
Score = 102 bits (112), Expect = 6e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
|||||||| || ||||| ||||| | | | || | || ||||||||||| ||||||||
Sbjct 254257 TCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCAAAG 254316
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
|||| || |||||||| | ||||| || |||||||| || || || |||
Sbjct 254317 ATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACATTC 254376
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | | || || | ||| || |||| || || ||||| || ||||||||||| ||
Sbjct 254377 TCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTAACG 254436
Query 48756 AAAATCTGCAT 48766
||||| |||||
Sbjct 254437 AAAATTTGCAT 254447
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || | || || | ||||||||| || || || ||||| || ||||| || |
Sbjct 253508 CGCCTCCGCGAAGACGTAGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGG 253567
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
||| | || | || |||| ||||||||| || || |||| ||||||||||| | |
Sbjct 253568 ATAATGTACGTCCATCTTCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAG 253627
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
| | || |||||||| ||||| || ||| | | | ||||| | || |
Sbjct 253628 GGATACCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGA 253687
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
| |||| || || || || ||||||||||| || || ||||| |||||
Sbjct 253688 CTTCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380929215325338
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |