Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1762 176 2e-39 >seq1762 Length=809008 Score = 176 bits (194), Expect = 2e-39 Identities = 330/484 (68%), Gaps = 6/484 (1%) Strand=Plus/Minus Query 25887 TATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTG 25946 ||| |||||| | ||| |||||| ||||| ||||| || ||||||||| || | Sbjct 694282 TATGTGGACACATTAATGACCAATCCTCATTTGCTTCAACACGCTTCATAAATAAGTCAG 694223 Query 25947 GAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTT 26006 | ||||||| ||||||||||||||||| |||| || ||||||||| ||| || | Sbjct 694222 GTATCCACAAAGCATAAAATAAATCTCTAGCTCGATGCTCCTCTTTTCCGGTATTTTTCT 694163 Query 26007 TTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTAC 26066 ||| ||| || || ||||||||||| | |||||| || || || || ||||||||| | Sbjct 694162 TTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGTATATAGCAAAAGCTC 694103 Query 26067 CTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACA 26126 || || ||| || ||||||||||| || || | ||| | ||||||||| ||||| Sbjct 694102 CTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTATTGAAAACACGCAACA 694043 Query 26127 TTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAA 26186 |||| || || ||| |||| || || |||| |||| | ||| | | | | Sbjct 694042 TTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAATCGAAGTGCCTTTAGCGCGTA 693983 Query 26187 TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA---ATCTG 26243 || ||| ||| | || || |||||||| |||| ||||| |||||| || || Sbjct 693982 TACAATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAATCAATGCACATTGATGTG 693923 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAG 26303 |||| || || || | ||| || | ||| ||||| |||||| |||| Sbjct 693922 CCGATGTA---AATATGCCATCAATGGAGTCGTCGACCATAGTTAATAGAAAACATGAAG 693866 Query 26304 ATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATC 26363 ||||||| | || | || | | | ||| | ||| |||| ||||| ||| | || | Sbjct 693865 ATAATTGTGGCTGTTTGGTAGCGGCAGCAAAGAGTGTTGGTGAGGCATGTGTAAAGTAAC 693806 Query 26364 CTTC 26367 ||| Sbjct 693805 GTTC 693802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253034430431450