Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq913 116 5e-21 >seq913 Length=5285483 Score = 116 bits (128), Expect = 5e-21 Identities = 200/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || ||||||||||||||||| || | || ||| | ||| | |||||| || || Sbjct 2330750 CCGGTGGCAATAACAAAATCGGACGGCTTCTCACATTGCAACATCATCCACATGGCTTCC 2330691 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 |||||||| ||||||| ||||| ||||| | ||| | ||| |||| | || | Sbjct 2330690 ACATAATCCATGGCATGACCCCAATCACGTTTCGAATCCAAATTGCCTAACTCAAAGGAT 2330631 Query 47908 TCTTGCTTACCTTCAGAGATTGCTTTT----AATGCTCTTGTAATCTTACGAGTTACAAA 47963 || || || | ||| | |||| | || | ||||| || ||||| || || Sbjct 2330630 TCCAACTG---TTGAT-GATAGATTTTCGCAACTGAACGGGTAATTTTGCGAGTCACGAA 2330575 Query 47964 AGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCC 48023 | |||| ||||| | ||| || |||||||| ||||| |||||| ||||||| ||||| Sbjct 2330574 ATTTTCGCCACGACGTGGTGACTCATGATTGAAAAGTATACCATTACAGGCGTACATATT 2330515 Query 48024 GTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGC 48071 || | |||||||||||| | || ||||| | ||||| | ||| || Sbjct 2330514 ATACGCTTCACGATAGTTGATAACAATCCAAAATCCATACATTTTAGC 2330467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665479376463920