Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1762 138 1e-27 >seq1762 Length=809008 Score = 138 bits (152), Expect = 1e-27 Identities = 629/980 (64%), Gaps = 27/980 (3%) Strand=Plus/Plus Query 75608 TACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTAC-GACTCA-ACCAAG 75665 |||||||| || ||||| || ||||| | || || | || ||| || | ||| | Sbjct 694117 TACTTGGAGCCTTGGCACGCTGATATTTTTGAATTTTTGGATTTAAAGAAAAATACC--G 694174 Query 75666 GTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCA 75725 | | || ||| ||| ||||||| | |||| | ||||||| || ||| | || | Sbjct 694175 GAAAAGAGGAGCATCGAGCTAGAGATTTATTTTATGCTTTGTGGATACCTGACTTATTTA 694234 Query 75726 TGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTC 75785 ||||||| ||||| | || | ||||| | | |||||| | ||| || || Sbjct 694235 TGAAGCGTGTTGAAGCAAATGAGGATTGGTCATTAATGTGTCCACATAAGTGTCCCGGAT 694294 Query 75786 TCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTA 75845 | ||| | |||||| || || ||| | |||||||| |||||| | || || Sbjct 694295 TACACGAAGTTTGGGGTGAAGAATTCGAAAAGTTATACACAAAATATGAACAAGAAGGAC 694354 Query 75846 GAGCCAATGCGACTGTACCAGCCGCCGATG--TTTGGAAGGCTATTCTCAAATCACAGAC 75903 | || ||| || || |||| | | | ||||| | ||| | |||| ||| Sbjct 694355 GTGCTAATAAGAAAGTTAAAGCC--CAAAGCCTTTGGTTTTCCATTATAGAATCGCAGGT 694412 Query 75904 GGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAA 75963 |||||| || ||||| |||||| | || |||||||||||||| | |||||||| ||| | Sbjct 694413 GGAGACGGGCACACCGTATATGTTATATAAGGATGCTTGTAATAGAAAGAGTAATCAACA 694472 Query 75964 GAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAA 76023 |||| | || ||||| || || ||| | ||||| |||||| | ||||| ||| Sbjct 694473 GAATATTGGCACAATTAAATGCAGTAATTTATGCACAGAAATTGTTGAGTATTCAGCACC 694532 Query 76024 GGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGA 76083 || ||| ||||| |||||||| ||||| || ||||| | || ||| | | | Sbjct 694533 TGACGAGGTAGCTGTATGCAATTTAGCATCGATTGCCCTCAATATGTTTGTTA--CACCA 694590 Query 76084 GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 ||| | | |||| | || || | ||| |||| |||| || || ||| | Sbjct 694591 GAC-AAAAAATACGATTTTAAACGCCTCAAGGAAGTCACTAAGACCGTGACGCGGAATTT 694649 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGTTG--AGACTGCGCGAAAGTCTAATATG 76201 ||| | ||||||| | ||| ||| || ||| || | |||| |||||| | Sbjct 694650 AAATAAAATCATTGATATAAACCACTAT-CCATTGCCTGAAGCCAAGAAA-TCTAATTTC 694707 Query 76202 CGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGC 76261 | || | || || ||| | ||||| |||||| | || || | ||| || | ||| Sbjct 694708 AGGCATCGTCCGATCGGTATTGGTGTACAAGGTTTAGCAGACGCATTAATCCTCATGCGC 694767 Query 76262 TACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321 || | | || || |||| ||||| | || |||||||| || || Sbjct 694768 TATCCTTACGAAAGCGAACAAGCATTCCTATTGAATCAACAAATATTTGAAACAATTTAC 694827 Query 76322 CACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTT 76381 | | | | || || || || |||||||||||| || | || || || | | Sbjct 694828 TATGGTGCTTTAGAAGCCAGCTGCGAATTGGCTGAAAAATTTGGGCCTTACGAAACTTAT 694887 Query 76382 GAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAA--CCA 76439 || ||||| || | | |||| | | |||| |||||||||||| | ||| || Sbjct 694888 GAAGGTTCACCGGTTAGCAAAGGTATTTTACAGTATGATATGTGGGA---TAAAAAGCCG 694944 Query 76440 AGCTCAACTACG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAA 76497 | || ||||| | | ||| || | || ||| || ||| | | ||| | || || Sbjct 694945 A-CTGAACTATGGAATTGGACTGAGTTGAAAGAAAAAATTAAGAAACATGGTGTACGCAA 695003 Query 76498 CAGTCTTT--TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 76555 | ||||| | | ||||| |||||||| || || || |||||||| ||||||||||| Sbjct 695004 C--TCTTTACTACTTGCACCCATGCCAACCGCTTCAACGGCACAAATAATGGGTAATAAT 695061 Query 76556 GAATGCTTTGAACCATACAC 76575 |||| ||||| || ||||| Sbjct 695062 GAATCTTTTGAGCCGTACAC 695081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596556132441280