Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq925 170 3e-37
seq454 104 3e-17
>seq925
Length=3171676
Score = 170 bits (188), Expect = 3e-37
Identities = 364/541 (67%), Gaps = 4/541 (1%)
Strand=Plus/Minus
Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214
|||||||| |||||| |||||||| || || | || || || || || || |||
Sbjct 2021629 AAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTT 2021570
Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274
|| || ||||||| ||| | ||| || |||||||| || ||||| ||||| | ||||
Sbjct 2021569 AAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAG 2021510
Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT-GTATTTATTGCT 18333
||||| || ||||| || || || |||| | |||| |||| | | | |||
Sbjct 2021509 AATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAA 2021450
Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393
| ||||| | ||||| || | | | | || || |||| || ||
Sbjct 2021449 GAA-ATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGC 2021391
Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453
||| ||||||| ||| ||| |||| || || ||||| ||||| ||||| | |||
Sbjct 2021390 ATTGAACAAATAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATA 2021331
Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513
|||||| || || | |||||||||| || ||||||| || || | | ||||| |
Sbjct 2021330 CATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGT 2021271
Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573
||||| || | || | |||||||||||| ||||| || ||||| || | |
Sbjct 2021270 TACTTGAACTTCTTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGC 2021211
Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCC- 18632
|| ||||| || || || | || |||||| |||| || || | || | || ||
Sbjct 2021210 GGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAG-TCGTGCCC 2021152
Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692
| ||||||| ||| || |||| ||| || |||||| ||||||||||| | ||| ||||
Sbjct 2021151 AATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCTTCTGCCT 2021092
Query 18693 G 18693
|
Sbjct 2021091 G 2021091
>seq454
Length=983520
Score = 104 bits (114), Expect = 3e-17
Identities = 153/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || |||| || ||||| || || || || || || ||||||||| ||
Sbjct 253736 ATGCAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCA 253677
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || || ||||| || || ||||| || ||||| || |||||||| |||
Sbjct 253676 GATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGATCAA 253617
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | ||||||| || ||||||||||| |||||| | || ||||| || || |
Sbjct 253616 CAGCGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATGGACGTACATTATCCGACTACA-- 253559
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTA 156035
| ||||||| || | || || ||||| ||| ||
Sbjct 253558 ACATCCAAAAGGAATCTACCCTCCATTTGGTGCTA 253524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731855477989600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |