Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq925 170 3e-37 seq454 104 3e-17 >seq925 Length=3171676 Score = 170 bits (188), Expect = 3e-37 Identities = 364/541 (67%), Gaps = 4/541 (1%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 |||||||| |||||| |||||||| || || | || || || || || || ||| Sbjct 2021629 AAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTT 2021570 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||||| ||| | ||| || |||||||| || ||||| ||||| | |||| Sbjct 2021569 AAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAG 2021510 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT-GTATTTATTGCT 18333 ||||| || ||||| || || || |||| | |||| |||| | | | ||| Sbjct 2021509 AATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAA 2021450 Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 | ||||| | ||||| || | | | | || || |||| || || Sbjct 2021449 GAA-ATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGC 2021391 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||| ||||||| ||| ||| |||| || || ||||| ||||| ||||| | ||| Sbjct 2021390 ATTGAACAAATAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATA 2021331 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||||| || || | |||||||||| || ||||||| || || | | ||||| | Sbjct 2021330 CATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGT 2021271 Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 ||||| || | || | |||||||||||| ||||| || ||||| || | | Sbjct 2021270 TACTTGAACTTCTTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGC 2021211 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCC- 18632 || ||||| || || || | || |||||| |||| || || | || | || || Sbjct 2021210 GGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAG-TCGTGCCC 2021152 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | ||||||| ||| || |||| ||| || |||||| ||||||||||| | ||| |||| Sbjct 2021151 AATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCTTCTGCCT 2021092 Query 18693 G 18693 | Sbjct 2021091 G 2021091 >seq454 Length=983520 Score = 104 bits (114), Expect = 3e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || ||||| || || || || || || ||||||||| || Sbjct 253736 ATGCAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCA 253677 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || ||||| || || ||||| || ||||| || |||||||| ||| Sbjct 253676 GATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGATCAA 253617 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| || ||||||||||| |||||| | || ||||| || || | Sbjct 253616 CAGCGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATGGACGTACATTATCCGACTACA-- 253559 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTA 156035 | ||||||| || | || || ||||| ||| || Sbjct 253558 ACATCCAAAAGGAATCTACCCTCCATTTGGTGCTA 253524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731855477989600