Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq925 178 3e-39 seq145 150 4e-31 seq1310 147 4e-30 seq454 120 6e-22 >seq925 Length=3171676 Score = 178 bits (196), Expect = 3e-39 Identities = 461/701 (66%), Gaps = 11/701 (2%) Strand=Plus/Minus Query 49655 ATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTAAA 49714 ||||||||| ||||||| ||| | ||||| | |||||||||||| | || || | Sbjct 2021792 ATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAGGTTTAC 2021733 Query 49715 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataat 49774 |||||||| || | ||||||| ||| |||| || |||| || || ||| Sbjct 2021732 AGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGATTTCAAT 2021673 Query 49775 tatattattttttgataa-tttatatttaatatgattcgcatatattaaACATGCAAAAT 49833 ||| || || | ||| | | | | ||| | | | | || ||||| || |||| Sbjct 2021672 AATACG-TTCCCTGCTGGGTTTCTGTATCAAATGTT--GGA-ACATCAAACACGCGAAAT 2021617 Query 49834 CAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTA 49893 || ||||||||||||||| | || || || ||||| || ||||| || ||||||| Sbjct 2021616 CACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCATTA 2021557 Query 49894 ATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGA 49953 | || | || ||||||||||| |||||||||||||| | ||||||||| || || | Sbjct 2021556 AACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCTTCAA 2021497 Query 49954 CACACGCAAATGCTATTATTCTTGCTCCAAACATT--AATTTATCATCTAATATCCAATT 50011 || |||||||| ||||| | | | ||||| || | | | | | |||||| Sbjct 2021496 CAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGA--AGAAATCCAAGC 2021439 Query 50012 TATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATTC 50071 | |||||||| || || || | || ||| || | || || || || || || | Sbjct 2021438 CAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGCATTGAACAAATA 2021379 Query 50072 AtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGAATG 50131 | | ||| | ||||||| ||||||||| || || Sbjct 2021378 GTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAGTG 2021319 Query 50132 TACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATAC-TGAACTT 50190 ||| ||||||||| |||||||| || || | || || | ||| ||||||| Sbjct 2021318 CACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCG-TTACTTGAACTT 2021260 Query 50191 CGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATG 50250 | | ||| ||||| || ||||| ||| |||||||||||| || || || || || | Sbjct 2021259 CTTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGG 2021200 Query 50251 CTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGAT 50310 |||| |||| || ||||||| |||| || || | | | ||||| || | || Sbjct 2021199 CTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCGTGCCCAATCATCTAAAT 2021140 Query 50311 CGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351 | || ||||||||||| ||||| | |||||||| || ||| Sbjct 2021139 CCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCT 2021099 >seq145 Length=1338480 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||||||||| | ||||| ||||| |||| ||| || ||||||||| |||| | Sbjct 898811 CCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCT 898870 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || |||| |||| |||||| || || || ||||| | |||||||| || || Sbjct 898871 AAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGA 898930 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||||||||| ||||| || |||| |||| ||| || | ||| || Sbjct 898931 ATACCTTCTTTATCTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGACC 898990 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||| ||||| ||||| || | ||||| | || || |||||| Sbjct 898991 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCATT 899038 >seq1310 Length=3030561 Score = 147 bits (162), Expect = 4e-30 Identities = 179/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| |||||||| | ||||| || || || || | || | ||| || ||||| Sbjct 645218 GTTCAATGATACCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATAT 645159 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | ||||| || || || || |||| ||||||||||| || || ||||| || | |||| Sbjct 645158 TGTAATCGGACAAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTT 645099 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| ||||| || |||||||| ||||| ||||| ||| ||||| || | || | Sbjct 645098 GATCTGGTGGGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAG 645039 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | | || || || | ||| ||||| |||||||| | |||||| | ||| |||||||||| Sbjct 645038 ATGGCTCGACCTCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCATTT 644979 Query 192539 TATT 192542 | || Sbjct 644978 TGTT 644975 >seq454 Length=983520 Score = 120 bits (132), Expect = 6e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||| |||||||| ||| |||| ||||| || |||||||| || || || | | Sbjct 255741 ATGTTGTAATCGGATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGC 255800 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| || || || |||||||| ||||| || || || ||||| || | | Sbjct 255801 TGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGGTA 255860 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| || || ||||||||||| || ||||||| || || | || || ||| Sbjct 255861 TCAGATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGC 255920 Query 192535 ATTT 192538 |||| Sbjct 255921 ATTT 255924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984457219748100