Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq145 141 2e-28 seq925 129 1e-24 seq1310 120 5e-22 seq454 116 7e-21 >seq145 Length=1338480 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||||||||| || | ||||| ||||| |||| ||| || |||||||| || | | Sbjct 898811 CCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCT 898870 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| || | || |||| |||||| || || |||||||| | ||||| || || || Sbjct 898871 AAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGA 898930 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||||||||| ||||| || |||| |||||||| || | ||| || Sbjct 898931 ATACCTTCTTTATCTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGACC 898990 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||| ||||| ||||| || | ||||| | ||| || |||||| Sbjct 898991 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCATT 899038 >seq925 Length=3171676 Score = 129 bits (142), Expect = 1e-24 Identities = 447/701 (64%), Gaps = 11/701 (2%) Strand=Plus/Minus Query 38957 ATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAA 39016 |||||| || ||||||| ||| | |||| | |||||||||||| | || || | Sbjct 2021792 ATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAGGTTTAC 2021733 Query 39017 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataat 39076 |||||||| || | ||||||| ||| |||| || |||| || || ||| Sbjct 2021732 AGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGATTTCAAT 2021673 Query 39077 tatattattttttgataa-tttatatttaatatgattcgcatataGTAAACATGCAAAAT 39135 ||| || || | ||| | | | | ||| || | | || ||||| || |||| Sbjct 2021672 AATACG-TTCCCTGCTGGGTTTCTGTATCAAATG-TTGGAACATC--AAACACGCGAAAT 2021617 Query 39136 CCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTA 39195 | ||||||||| ||||| | || || || ||||| || ||||| || ||||||| Sbjct 2021616 CACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCATTA 2021557 Query 39196 ATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCA 39255 | || | || ||||||||||| |||||||||||||| | ||||||||| || || | Sbjct 2021556 AACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCTTCAA 2021497 Query 39256 CACACGCAAATGCTATTATTCTTGCTCCAAACATT--AATTTATCATCTAAAATCCAATT 39313 || |||||||| ||||| | | | ||||| || | | | | |||||||| Sbjct 2021496 CAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAAG--AAATCCAAGC 2021439 Query 39314 TATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATTC 39373 | |||||||| || || || | || ||| || | || || || || || || | Sbjct 2021438 CAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGCATTGAACAAATA 2021379 Query 39374 ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAGAATG 39433 | ||||||||| || || Sbjct 2021378 GTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAGTG 2021319 Query 39434 TACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACT-GAACTT 39492 ||| ||||||||| |||||||| || || || || || | |||| |||||| Sbjct 2021318 CACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGT-TACTTGAACTT 2021260 Query 39493 CGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATG 39552 | | ||| ||||| || ||||| ||| |||||||||||| || || || || || | Sbjct 2021259 CTTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGG 2021200 Query 39553 CTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGAT 39612 |||| || | || ||||||| |||| || || | | | ||||| || | || Sbjct 2021199 CTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCGTGCCCAATCATCTAAAT 2021140 Query 39613 CGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 | || ||||||||||| ||||| | ||||||||||| ||| Sbjct 2021139 CCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCT 2021099 >seq1310 Length=3030561 Score = 120 bits (132), Expect = 5e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | || || || || || || | || | ||| || ||||| ||| Sbjct 645213 ATGATACCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAA 645154 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || |||| || | || ||||||||||| || || || || || | ||||| || Sbjct 645153 TCGGACAAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCT 645094 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || |||||||| ||||| ||||| ||| ||||| || || || || | Sbjct 645093 GGTGGGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGC 645034 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 || || || | ||| ||||| |||||||| | |||||| | || ||||||||||| || Sbjct 645033 TCGACCTCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCATTTTGTT 644975 >seq454 Length=983520 Score = 116 bits (128), Expect = 7e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||| ||||| | ||| | || ||||| || |||||||| ||||| || | | Sbjct 255741 ATGTTGTAATCGGATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGC 255800 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || || || || |||||||| ||||| || || || ||||| || ||| Sbjct 255801 TGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGGTA 255860 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||| || || ||||||||||| || ||||||| || || | ||| || ||| Sbjct 255861 TCAGATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGC 255920 Query 172068 ATTT 172071 |||| Sbjct 255921 ATTT 255924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905115566554800