Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 168 2e-36
seq333 127 6e-24
seq1058 104 7e-17
seq1387 96.9 1e-14
seq1137 87.8 5e-12
>seq1762
Length=809008
Score = 168 bits (186), Expect = 2e-36
Identities = 730/1135 (64%), Gaps = 31/1135 (3%)
Strand=Plus/Minus
Query 155400 AATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATT-GCTCCT 155458
|||| ||| |||||||| || || |||||||||| || ||||||||| |||| | | |
Sbjct 694754 AATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCCTGAAATTAGAT--T 694697
Query 155459 GCTTGTCTTCTTGTT-TGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCA 155517
|||| |||| | ||| || || | |||||| || ||||||||||| ||
Sbjct 694696 TCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTAAATTCCGCGTCA 694637
Query 155518 ATACCTTGGTTACGTCTGCTAA---TTTCACATAGTCAAATGTTTTATCCTCATTTACAA 155574
||| || || || | ||| | || || || |||| || | ||||
Sbjct 694636 CGGTCTTAGTGACTTCCTTGAGGCGTTTAAAATCGT---ATTTTTTGTCTGGTGTAACAA 694580
Query 155575 ACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTC-GTCGCTGTAT 155633
||||| || |||| || || | ||| ||||| || ||| ||| | |||| ||
Sbjct 694579 ACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTACCTC---GTCAGGTGCTGAAT 694523
Query 155634 TCT--ACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAG 155691
|| ||||| || ||| | ||| | || || ||||| | ||||| || |||
Sbjct 694522 ACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATATTCTGTTGATTAC 694463
Query 155692 ATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGT 155751
|| || |||||||||||||| |||| || || || || || ||||||| ||| | |
Sbjct 694462 TCTTTCTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTCTCCACCTGCGATT 694403
Query 155752 CCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACT 155811
| | ||| | ||| ||| |||| |||| || ||| || | ||||| |
Sbjct 694402 CTATAATGGAAAACCAAAGGCTTTGGGCTTTAACTTTCTTATTAGCACGTCCTTCTTGTT 694343
Query 155812 CATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACT 155871
||||||| | || | | || | | || ||||| || || | ||| || ||||
Sbjct 694342 CATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAACTTCGTGTAATCCGGGACACT 694283
Query 155872 TATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCAC 155931
||| || || | | |||||| | ||| | ||||||| |||||||| |||
Sbjct 694282 TATGTGGACACATTAATGACCAATCCTCATTTGCTTCAACACGCTTCATAAATAAGTCAG 694223
Query 155932 TCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCTTC 155990
||| | |||||| || | || || || | || |||||| | ||| ||| |||
Sbjct 694222 GTATCCACAAAGCATAAAATAAATCTCTAGCTCGATG-CTCCTCTTTTCCGGTATTTTTC 694164
Query 155991 CGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA-CT 156049
|| || || ||||| |||||||| || ||||||| || ||||||||| ||
Sbjct 694163 TTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGTATATAGCAAAAGCT 694104
Query 156050 ACCATTCCTCT--TGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGC 156107
| || | | |||||| ||||| ||||| || || |||||||| |||| | |
Sbjct 694103 CCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTATTGAAAACACGCAAC 694044
Query 156108 ATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA---CCAGATGAG 156164
|| || | | ||||| || |||||||| || || ||| |||| || | |
Sbjct 694043 ATTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAAT---CGAAGTGCCTTTAGCG 693987
Query 156165 CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCC 156224
|| | | ||||| || || ||||||||||| | |||||||||| || ||||
Sbjct 693986 CGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAATCAATGCACATTGA 693927
Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAA 156284
| | | | | || || || ||||| || || || |||| | || |||| | || |||
Sbjct 693926 TGTGCCGATGTAAATATGCCATCAATGGAGTCGTCGACCATAGTTAATAGAAAACATGAA 693867
Query 156285 CTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATAC 156344
|||||| || || || | || || ||||| |||| ||||| |||| ||
Sbjct 693866 GATAATTGTGGCTGTTTGGTAGCGGCAGCAAAGAGTGTTGGTGAGGCATGTGTAAAGTAA 693807
Query 156345 TTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAG 156404
| || | ||| |||||| || | | || | || || || ||||
Sbjct 693806 CGTTCTGAAAGCAAATTGTATGTGTCGATTGCCGCATCTATATCCTCACCATGTATACCA 693747
Query 156405 ATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCA-TCAATTCGCAG 156463
|| | || | ||| |||||||||| || || || ||||| ||| |||| | | ||
Sbjct 693746 ATGGCTACACGCATTAACATATGCTGTGGCCGTTCAACAATTTTACCATTCAACTTG-AG 693688
Query 156464 AAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCA-AACAGAAAATCACG 156517
| || | ||||| ||||| |||||||||||||||| | ||| | ||||||||
Sbjct 693687 TAAATAGGAACGTTCAAGAGTCTTAAACCCGAAATAATTATAACCG-AAATCACG 693634
>seq333
Length=5851039
Score = 127 bits (140), Expect = 6e-24
Identities = 193/272 (71%), Gaps = 6/272 (2%)
Strand=Plus/Plus
Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634
|||||| ||| || | |||||||||||||||||| ||| || ||||||||||| |||
Sbjct 3371506 TCCATAGCCTTTATGAGACGACGCTGAATATAACCGGTTTCAGCAGTTTTTACAGCAGTA 3371565
Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694
|| || ||||| |||||||||||||||| || ||| | | || |||| || ||
Sbjct 3371566 TCGATAAGACCTTCACGACCACCCATAGCGTGAAAGTAGAATTCAGACGGTGTTAAGCCG 3371625
Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751
||| | | || | || ||||| || || | ||| || || ||||||| ||| |
Sbjct 3371626 GCAAGATATGAATTTTCGACGAAGCCGCGAGACTCAGGACCGTAATCGTC---TTTGATG 3371682
Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811
|| ||||||| || | || | | ||||| || ||||| || || || ||||||||
Sbjct 3371683 AAATGTGGCAATGTACGTTTACGAAAACCGTACGGTATACGTTTACCTTCGACGTTCTGT 3371742
Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
|| || | || | ||| | ||| || |||||
Sbjct 3371743 TGACCTACACAAGCAATAACCTGGGAGATATT 3371774
>seq1058
Length=3952709
Score = 104 bits (114), Expect = 7e-17
Identities = 328/498 (66%), Gaps = 18/498 (4%)
Strand=Plus/Minus
Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911
||| || || || | ||| |||| ||| ||| || ||||| | | ||||||||| ||
Sbjct 2540073 ATCGAATCTTCCTGGACGCATTAACGCTTTGTCCAAAATATCTACACGGTTTGTTGCCGC 2540014
Query 288912 CAATACAACAATAGATTCG--GTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT- 288968
||| ||||||| | || | ||| || || |||||||| || | ||||||
Sbjct 2540013 CAAAACAACAACA--TTAGTAGTTGTATTGAAGCCATCCATTTCCACCAACAATTGATTT 2539956
Query 288969 -AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttt 289027
|||||||| || |||| || ||| || | ||| ||||| |
Sbjct 2539955 AAAGTGTTT--TCTTGTTCAGAATGACCACCAAAAGATTTACCACC-TCGCTTCCG---- 2539903
Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087
|||||||||||||||||| |||||||| | | ||| || | || | ||| || || |
Sbjct 2539902 -ACCAACAGCATCAATTTCATCAATGAATAAGATACATGGTGCATGCTTTCTAGCCATAG 2539844
Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147
||| | || | || || |||| || | ||||||| |||| || | || || |||
Sbjct 2539843 AAAACATATCACGAACGCGTGATGGACCTACACCAACAAACATCTCCAAGAACTCTGAAC 2539784
Query 289148 CGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207
||||||| ||| || | |||||| |||||||| || |||| | |||| | || |
Sbjct 2539783 CGGATACACTAATAAAAGGTACATTCGCTTCGCCGGCAGTTGCCTTTGCCAACAAAGTTT 2539724
Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266
|||| || ||||| || || | | | || || |||| ||| || || || |
Sbjct 2539723 TACCGGTACCAGGCGGACCAGTCAGCATTGCACCTTTAGGTATTTTCGCTCCGAGGTCA- 2539665
Query 289267 TTATATTTCTCAGGGCTCTTTA-AAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325
|||||| | || |||||| |||||| |||| |||| | |||| ||| || ||
Sbjct 2539664 ATATATTGTTGTGGATTCTTTAGGAAATTC-ACAAATTCCATTATTTCAATTTTGGCTTC 2539606
Query 289326 ATCACATCCTGCTACATC 289343
||||| || || || ||
Sbjct 2539605 TTCACAACCCGCAACGTC 2539588
>seq1387
Length=2789183
Score = 96.9 bits (106), Expect = 1e-14
Identities = 228/341 (67%), Gaps = 4/341 (1%)
Strand=Plus/Plus
Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597
||||| ||| || |||||| | ||||| ||||||| || |||| ||| |
Sbjct 1015130 ATTTCGTACTGTGCCATCATATTGCACCATAACCGATTCCATAGCTTTTATTAGACGCCT 1015189
Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657
|| || || || ||| || || || ||||| ||||| || || || | || |||||
Sbjct 1015190 TTGTATGTATCCCGTTTCAGCAGTCTTCACAGCCGTATCGATGAGTCCCTCGCGTCCACC 1015249
Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCTCAACG 302715
||| ||||| ||| | | || || ||| |||| ||| | | ||| ||||||||
Sbjct 1015250 CATTGCATGAAAGTAGAATTCACTTGG-CGTTAAGCCTGCCAG-ATATGAGTTCTCAACG 1015307
Query 302716 AAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCA 302775
||||| || || || ||| || || |||| | || ||||||| || | || |
Sbjct 1015308 AAACCGCGTGCTTCTGGCCCATAATCATCCTTGATGAAATGTGGCATTGTACGCTTACGA 1015367
Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835
| || || || ||||| || || ||||| |||||||| || | || | |||| ||
Sbjct 1015368 AAACCATAAGGTATACGTTTACCTTCAACATTCTGCTGACCTACACAGGCGATCACTTGT 1015427
Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876
|| || || | | ||| ||||| |||||| |||||||
Sbjct 1015428 GATATGTTGATGTTGGAGCCTTTGGAACCAGCAATTACCAT 1015468
>seq1137
Length=156564
Score = 87.8 bits (96), Expect = 5e-12
Identities = 123/171 (72%), Gaps = 4/171 (2%)
Strand=Plus/Minus
Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330
||||||| | | ||| | |||||||||||||| ||||| | ||||||||||| ||
Sbjct 93479 TAGCACCATACGAAATGAGGCAATCACGTTCCATCTCACCCAAGCGCAGACCACCCTC-- 93422
Query 233331 TTGAC--CTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATA 233388
| ||| | |||||| || ||| ||||| | || | | |||| || | |||||
Sbjct 93421 TCGACTGCGACCCTGTGTTGGTTGTCGAGTAAGCACGGCTTTTGGGCCGCGTGCACGTGC 93362
Query 233389 ATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACC 233439
|| |||||||||| ||||||||||||| | | |||||| ||||||
Sbjct 93361 ATGCATTTTATCTTGCACCATATGCTTCAATTTTTGATAATACACCGGACC 93311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471783543060622
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