Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1762 168 2e-36 seq333 127 6e-24 seq1058 104 7e-17 seq1387 96.9 1e-14 seq1137 87.8 5e-12 >seq1762 Length=809008 Score = 168 bits (186), Expect = 2e-36 Identities = 730/1135 (64%), Gaps = 31/1135 (3%) Strand=Plus/Minus Query 155400 AATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATT-GCTCCT 155458 |||| ||| |||||||| || || |||||||||| || ||||||||| |||| | | | Sbjct 694754 AATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCCTGAAATTAGAT--T 694697 Query 155459 GCTTGTCTTCTTGTT-TGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCA 155517 |||| |||| | ||| || || | |||||| || ||||||||||| || Sbjct 694696 TCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTAAATTCCGCGTCA 694637 Query 155518 ATACCTTGGTTACGTCTGCTAA---TTTCACATAGTCAAATGTTTTATCCTCATTTACAA 155574 ||| || || || | ||| | || || || |||| || | |||| Sbjct 694636 CGGTCTTAGTGACTTCCTTGAGGCGTTTAAAATCGT---ATTTTTTGTCTGGTGTAACAA 694580 Query 155575 ACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTC-GTCGCTGTAT 155633 ||||| || |||| || || | ||| ||||| || ||| ||| | |||| || Sbjct 694579 ACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTACCTC---GTCAGGTGCTGAAT 694523 Query 155634 TCT--ACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAG 155691 || ||||| || ||| | ||| | || || ||||| | ||||| || ||| Sbjct 694522 ACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATATTCTGTTGATTAC 694463 Query 155692 ATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGT 155751 || || |||||||||||||| |||| || || || || || ||||||| ||| | | Sbjct 694462 TCTTTCTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTCTCCACCTGCGATT 694403 Query 155752 CCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACT 155811 | | ||| | ||| ||| |||| |||| || ||| || | ||||| | Sbjct 694402 CTATAATGGAAAACCAAAGGCTTTGGGCTTTAACTTTCTTATTAGCACGTCCTTCTTGTT 694343 Query 155812 CATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACT 155871 ||||||| | || | | || | | || ||||| || || | ||| || |||| Sbjct 694342 CATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAACTTCGTGTAATCCGGGACACT 694283 Query 155872 TATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCAC 155931 ||| || || | | |||||| | ||| | ||||||| |||||||| ||| Sbjct 694282 TATGTGGACACATTAATGACCAATCCTCATTTGCTTCAACACGCTTCATAAATAAGTCAG 694223 Query 155932 TCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCTTC 155990 ||| | |||||| || | || || || | || |||||| | ||| ||| ||| Sbjct 694222 GTATCCACAAAGCATAAAATAAATCTCTAGCTCGATG-CTCCTCTTTTCCGGTATTTTTC 694164 Query 155991 CGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA-CT 156049 || || || ||||| |||||||| || ||||||| || ||||||||| || Sbjct 694163 TTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGTATATAGCAAAAGCT 694104 Query 156050 ACCATTCCTCT--TGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGC 156107 | || | | |||||| ||||| ||||| || || |||||||| |||| | | Sbjct 694103 CCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTATTGAAAACACGCAAC 694044 Query 156108 ATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA---CCAGATGAG 156164 || || | | ||||| || |||||||| || || ||| |||| || | | Sbjct 694043 ATTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAAT---CGAAGTGCCTTTAGCG 693987 Query 156165 CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCC 156224 || | | ||||| || || ||||||||||| | |||||||||| || |||| Sbjct 693986 CGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAATCAATGCACATTGA 693927 Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAA 156284 | | | | | || || || ||||| || || || |||| | || |||| | || ||| Sbjct 693926 TGTGCCGATGTAAATATGCCATCAATGGAGTCGTCGACCATAGTTAATAGAAAACATGAA 693867 Query 156285 CTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATAC 156344 |||||| || || || | || || ||||| |||| ||||| |||| || Sbjct 693866 GATAATTGTGGCTGTTTGGTAGCGGCAGCAAAGAGTGTTGGTGAGGCATGTGTAAAGTAA 693807 Query 156345 TTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAG 156404 | || | ||| |||||| || | | || | || || || |||| Sbjct 693806 CGTTCTGAAAGCAAATTGTATGTGTCGATTGCCGCATCTATATCCTCACCATGTATACCA 693747 Query 156405 ATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCA-TCAATTCGCAG 156463 || | || | ||| |||||||||| || || || ||||| ||| |||| | | || Sbjct 693746 ATGGCTACACGCATTAACATATGCTGTGGCCGTTCAACAATTTTACCATTCAACTTG-AG 693688 Query 156464 AAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCA-AACAGAAAATCACG 156517 | || | ||||| ||||| |||||||||||||||| | ||| | |||||||| Sbjct 693687 TAAATAGGAACGTTCAAGAGTCTTAAACCCGAAATAATTATAACCG-AAATCACG 693634 >seq333 Length=5851039 Score = 127 bits (140), Expect = 6e-24 Identities = 193/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | |||||||||||||||||| ||| || ||||||||||| ||| Sbjct 3371506 TCCATAGCCTTTATGAGACGACGCTGAATATAACCGGTTTCAGCAGTTTTTACAGCAGTA 3371565 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| |||||||||||||||| || ||| | | || |||| || || Sbjct 3371566 TCGATAAGACCTTCACGACCACCCATAGCGTGAAAGTAGAATTCAGACGGTGTTAAGCCG 3371625 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | | || | || ||||| || || | ||| || || ||||||| ||| | Sbjct 3371626 GCAAGATATGAATTTTCGACGAAGCCGCGAGACTCAGGACCGTAATCGTC---TTTGATG 3371682 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || ||||||| || | || | | ||||| || ||||| || || || |||||||| Sbjct 3371683 AAATGTGGCAATGTACGTTTACGAAAACCGTACGGTATACGTTTACCTTCGACGTTCTGT 3371742 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || | || | ||| | ||| || ||||| Sbjct 3371743 TGACCTACACAAGCAATAACCTGGGAGATATT 3371774 >seq1058 Length=3952709 Score = 104 bits (114), Expect = 7e-17 Identities = 328/498 (66%), Gaps = 18/498 (4%) Strand=Plus/Minus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 ||| || || || | ||| |||| ||| ||| || ||||| | | ||||||||| || Sbjct 2540073 ATCGAATCTTCCTGGACGCATTAACGCTTTGTCCAAAATATCTACACGGTTTGTTGCCGC 2540014 Query 288912 CAATACAACAATAGATTCG--GTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT- 288968 ||| ||||||| | || | ||| || || |||||||| || | |||||| Sbjct 2540013 CAAAACAACAACA--TTAGTAGTTGTATTGAAGCCATCCATTTCCACCAACAATTGATTT 2539956 Query 288969 -AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttt 289027 |||||||| || |||| || ||| || | ||| ||||| | Sbjct 2539955 AAAGTGTTT--TCTTGTTCAGAATGACCACCAAAAGATTTACCACC-TCGCTTCCG---- 2539903 Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 |||||||||||||||||| |||||||| | | ||| || | || | ||| || || | Sbjct 2539902 -ACCAACAGCATCAATTTCATCAATGAATAAGATACATGGTGCATGCTTTCTAGCCATAG 2539844 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 ||| | || | || || |||| || | ||||||| |||| || | || || ||| Sbjct 2539843 AAAACATATCACGAACGCGTGATGGACCTACACCAACAAACATCTCCAAGAACTCTGAAC 2539784 Query 289148 CGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 ||||||| ||| || | |||||| |||||||| || |||| | |||| | || | Sbjct 2539783 CGGATACACTAATAAAAGGTACATTCGCTTCGCCGGCAGTTGCCTTTGCCAACAAAGTTT 2539724 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266 |||| || ||||| || || | | | || || |||| ||| || || || | Sbjct 2539723 TACCGGTACCAGGCGGACCAGTCAGCATTGCACCTTTAGGTATTTTCGCTCCGAGGTCA- 2539665 Query 289267 TTATATTTCTCAGGGCTCTTTA-AAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 |||||| | || |||||| |||||| |||| |||| | |||| ||| || || Sbjct 2539664 ATATATTGTTGTGGATTCTTTAGGAAATTC-ACAAATTCCATTATTTCAATTTTGGCTTC 2539606 Query 289326 ATCACATCCTGCTACATC 289343 ||||| || || || || Sbjct 2539605 TTCACAACCCGCAACGTC 2539588 >seq1387 Length=2789183 Score = 96.9 bits (106), Expect = 1e-14 Identities = 228/341 (67%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||| ||| || |||||| | ||||| ||||||| || |||| ||| | Sbjct 1015130 ATTTCGTACTGTGCCATCATATTGCACCATAACCGATTCCATAGCTTTTATTAGACGCCT 1015189 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 || || || || ||| || || || ||||| ||||| || || || | || ||||| Sbjct 1015190 TTGTATGTATCCCGTTTCAGCAGTCTTCACAGCCGTATCGATGAGTCCCTCGCGTCCACC 1015249 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCTCAACG 302715 ||| ||||| ||| | | || || ||| |||| ||| | | ||| |||||||| Sbjct 1015250 CATTGCATGAAAGTAGAATTCACTTGG-CGTTAAGCCTGCCAG-ATATGAGTTCTCAACG 1015307 Query 302716 AAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCA 302775 ||||| || || || ||| || || |||| | || ||||||| || | || | Sbjct 1015308 AAACCGCGTGCTTCTGGCCCATAATCATCCTTGATGAAATGTGGCATTGTACGCTTACGA 1015367 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | || || || ||||| || || ||||| |||||||| || | || | |||| || Sbjct 1015368 AAACCATAAGGTATACGTTTACCTTCAACATTCTGCTGACCTACACAGGCGATCACTTGT 1015427 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 || || || | | ||| ||||| |||||| ||||||| Sbjct 1015428 GATATGTTGATGTTGGAGCCTTTGGAACCAGCAATTACCAT 1015468 >seq1137 Length=156564 Score = 87.8 bits (96), Expect = 5e-12 Identities = 123/171 (72%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330 ||||||| | | ||| | |||||||||||||| ||||| | ||||||||||| || Sbjct 93479 TAGCACCATACGAAATGAGGCAATCACGTTCCATCTCACCCAAGCGCAGACCACCCTC-- 93422 Query 233331 TTGAC--CTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATA 233388 | ||| | |||||| || ||| ||||| | || | | |||| || | ||||| Sbjct 93421 TCGACTGCGACCCTGTGTTGGTTGTCGAGTAAGCACGGCTTTTGGGCCGCGTGCACGTGC 93362 Query 233389 ATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACC 233439 || |||||||||| ||||||||||||| | | |||||| |||||| Sbjct 93361 ATGCATTTTATCTTGCACCATATGCTTCAATTTTTGATAATACACCGGACC 93311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471783543060622