Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1762 342 5e-89 seq1310 152 5e-32 seq454 145 7e-30 seq145 107 2e-18 >seq1762 Length=809008 Score = 342 bits (378), Expect = 5e-89 Identities = 1172/1808 (65%), Gaps = 67/1808 (4%) Strand=Plus/Minus Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212 ||| ||||| || || | |||||||| || ||||| || || | || ||||||||| || Sbjct 695481 TTTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCC 695422 Query 138213 CGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272 |||||||| || || ||| | || | ||||| ||||| ||| ||||| | || Sbjct 695421 GGTTTTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGG 695362 Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGC 138332 || || | ||| ||||| |||||||| || ||||| || || || |||||| || Sbjct 695361 TTCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGC 695302 Query 138333 CATGTTAATTAAA-TTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATAT 138391 ||| || || || ||||||| |||||||| ||||| || || || || || || | Sbjct 695301 CATTTTTATGGAAGTTTTTACCGAA-ATCTCCCAAACGGTTTTATACAGTTCGCGTATGT 695243 Query 138392 GTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCA 138451 | | ||||| | | |||| ||||| || || | | || || ||||| ||| Sbjct 695242 TTTGGGGTATAGATTCAATGTTTTGTATTGAACCACGGCTAGTGATAATTTGATTTTTCA 695183 Query 138452 TGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCT 138511 | ||||| | | | ||| | | | ||| | || || ||||| |||| Sbjct 695182 TATCATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAACCT 695123 Query 138512 GAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATT 138571 |||| ||||||| | || || ||| ||||| ||| |||| | |||||||| |||| Sbjct 695122 GAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAGATT 695063 Query 138572 CGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAAT 138631 | || || |||| || || ||||| | ||||| |||||| || | | | ||| | Sbjct 695062 CATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAGAGT 695003 Query 138632 TCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAG 138691 | |||| ||| || ||| ||| ||| || | | | ||| | ||| | || | | Sbjct 695002 TGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTCCATAGTTCAGTCG 694943 Query 138692 GTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACG 138751 | ||||| | ||||||||| |||||||| || || || | || ||||| || | Sbjct 694942 GCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTTCATAAG 694883 Query 138752 AATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAA 138811 ||||| ||||| | || ||||| ||| ||| || || | ||||||||||||| Sbjct 694882 TTTCGTAAGGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCATAGTAAA 694823 Query 138812 TAGTTTCGGCAATCTGCTGATTGAGCAATCGG---GCCTCGGCGCTCTCGTACGGCATGC 138868 | ||||| || || ||||| |||| || || | |||| ||||| || || Sbjct 694822 TTGTTTCAAATATTTGTTGATT---CAATAGGAATGCTTGTTCGCTTTCGTAAGGATAGC 694766 Query 138869 GGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCA 138928 | | | | || ||||| || | ||||| || || | |||| || ||||| | | Sbjct 694765 GCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCCTGA 694706 Query 138929 GATTTGACGCTTTTGCGGCTTC---GATAGGATAATAGTTTACATCGATGATTTTGTTTA 138985 ||| || ||| |||||| | ||||| | ||||| ||| |||||||| |||| Sbjct 694705 AATTAGA---TTTCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTA 694649 Query 138986 AATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGT 139045 |||| ||| || |||||| | ||| | |||| |||||||||| | | Sbjct 694648 AATTCCGCGTCACGGTCTTAGTGACTTCCTTGAGGCGTTTAAAATCGTATTT------TT 694595 Query 139046 TGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCA 139105 |||| | || ||||| | |||| |||||| |||| ||||| || || | Sbjct 694594 TGTC-----TGGTGT-AACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTA 694541 Query 139106 CTTCGTCGGGGTCGCTG--TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGT 139163 | ||||| || |||| || || |||||||| | || |||||||| || || || || Sbjct 694540 CCTCGTCAGG--TGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGT 694483 Query 139164 ACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGT 139223 || | ||| |||||||| || |||| ||||||||||| || || | |||||||||||| Sbjct 694482 GCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGTGT 694423 Query 139224 GCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTA-GCTT--GTATTTG 139280 ||| || ||||| || | ||||||||| ||| | || | |||| | ||| Sbjct 694422 GCCCGTCTCCACCTGCGATTCTATAATG-----GAAAA---CCAAAGGCTTTGGGCTTTA 694371 Query 139281 ACGCACGTA-----AAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCA 139335 || | || | || | || | || || ||| ||| | | |||||| |||| Sbjct 694370 ACTTTCTTATTAGCACGTCCTTCTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCA 694311 Query 139336 CCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTC 139395 || | | || | || ||||||| | |||||||| | ||||| | | || Sbjct 694310 CCCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCAATCCTCATTT 694251 Query 139396 GCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC----GCG 139451 || | || ||| |||| || | || || ||||||||||| | | ||||| || Sbjct 694250 GCTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCT 694191 Query 139452 CG-CCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAG 139510 || || | | ||||| || || | || || || || ||||||| |||| Sbjct 694190 CGATGCTCCTCTTTTCCG---GTATTTTTCTTTAAATCCAAA--AATTCAAAAATATCAG 694136 Query 139511 CGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCTTGATCGA 139567 ||||||| || |||| || || || | || ||| ||||| |||||||||||| | Sbjct 694135 CGTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCA 694076 Query 139568 CGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGT 139627 | | ||| | | |||||||| || |||||||| || ||| || | | ||| || | Sbjct 694075 CATAACGTGCTACGTTATTGAAAACACGCAACATTGGTACCAAGCCATTTGATGTGCCAT 694016 Query 139628 TGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGC 139687 | |||| || | | || ||| || | ||| ||||| | ||| || || | Sbjct 694015 TCGTGCCCGCAATCGAAGTGCCTTTAGCGCGTATACAATGAACATTTAAGCCAATACCAC 693956 Query 139688 CGCCAAATTTGGATATTAAAACGCAATCGCGT---AATGTCTCGTATATACCTCTTATGC 139744 | || |||| || || || | || | || |||| |||| || ||| Sbjct 693955 CAGCAGATTTAGAAATCAATGCACATTGATGTGCCGATGT---AAATATGCCATCAATGG 693899 Query 139745 TGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTG 139804 |||||| ||| || | ||||| ||||| || | ||| || |||| || |||| | Sbjct 693898 AGTCGTCGACCATAGTTAATAGAAAACATGAAGATAATTGTGGCTGTTTGGTAGCGGCAG 693839 Query 139805 CAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGA 139864 |||| || || || || || || || ||| || | ||| | ||| || |||| Sbjct 693838 CAAAGAGTGTTGGTGAGGCATGTGTAAAGTAACGTTCTGAAAGCAAATTGTATGTGTCGA 693779 Query 139865 TGGCGCTCA-CAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGG 139923 | || | || | |||||| || || ||||| | | || ||||| | |||||| || Sbjct 693778 TTGC-CGCATCTATATCCTCACCATGTATACCAATGGCTACACGCATTAACATATGCTGT 693720 Query 139924 ATCCGTTC 139931 |||||| Sbjct 693719 GGCCGTTC 693712 >seq1310 Length=3030561 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || ||||| || || || | || || || |||| | Sbjct 644981 ATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGA-GCCATC 645039 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || ||| || ||||||||||||||||| || || || ||||| Sbjct 645040 TGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCA 645099 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||||||||| ||||| ||||| |||| ||| | | |||| ||||| || Sbjct 645100 ACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGATTACAA 645159 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| || || || |||||||||||||| |||| || || Sbjct 645160 TATCCAAAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTGCGTGGTGG 645207 >seq454 Length=983520 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || | ||||| ||||| || || | || || ||| | | Sbjct 254675 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAACCATCA 254616 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| ||||| || ||||| |||||| Sbjct 254615 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 254556 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||||||||| || ||||| || ||| | | | |||| || || ||| Sbjct 254555 CAACGTTTGATCTTTGCCGGCAAGCAGCTAGAAGATGGACGCACCTTGTCCGACTACAAC 254496 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||||||||| || || || ||||| ||||| ||||| || ||| Sbjct 254495 ATCCAAAAGGAATCTACTCTCCATTTGGTCTTGCGTTTGCGTGGTGGC 254448 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || | ||||| ||||| || || | || || ||| | | Sbjct 254903 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTCGAACCATCA 254844 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||||| || ||||| || || || |||||| Sbjct 254843 GATACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 254784 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTAT 24880 ||||||||||| |||||||| ||||| ||||| || || || || |||| || || Sbjct 254783 CAACGTTTGATTTTTGCCGGCAAACAACTGGAAGA--CG-GACGCACTTTGTCTGACTAC 254727 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || || || ||||| ||||| |||||||| || Sbjct 254726 AACATCCAAAAGGAGTCTACCCTTCATTTGGTATTGCGTTTGCGCGGTGG 254677 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || | || || || || || || | ||||| ||| | | Sbjct 253736 ATGCAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCA 253677 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| ||||| || ||||| |||||| Sbjct 253676 GATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGATCAA 253617 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCAGATTATAA 24882 || |||||||| || || || || |||||||| ||| || |||| || || || || Sbjct 253616 CAGCGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATG-GACGTACATTATCCGACTACAA 253558 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||| ||||||||||| || || || |||||| | || | |||||||||| Sbjct 253557 CATCCAAAAGGAATCTACCCTCCATTTGGTGCTACGTCTTCGCGGAGGCG 253508 Score = 111 bits (122), Expect = 1e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||||| | ||||| ||||| || || | ||||| || |||| | Sbjct 254447 ATGCAAATTTTCGTTAAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGA-GCCATC 254389 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || || ||||||||||| ||||| || || || ||||| Sbjct 254388 TGATACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAAGGTATTCCCCCAGATCA 254329 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||||||||||||||| || ||| |||| ||| | | |||| || || || Sbjct 254328 ACAACGTTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGACGCACTTTGTCTGACTACAA 254269 Query 24883 CATTCAAAAGGAATC 24897 ||| ||||| ||||| Sbjct 254268 CATCCAAAAAGAATC 254254 Score = 98.7 bits (108), Expect = 9e-16 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || ||||| || || || ||||| || || || ||| | | Sbjct 255922 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATTACTCTGGAGGTGGAACCATCT 255863 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||||||||||||||| || || || |||||| Sbjct 255862 GATACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 255803 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 || |||||||| || || || || ||| |||| || | || ||| | || ||||| || Sbjct 255802 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACATTATCCGATTACAA 255744 Query 24883 CAT 24885 ||| Sbjct 255743 CAT 255741 >seq145 Length=1338480 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || ||||| || || || || || || ||| || | Sbjct 899037 ATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCG 898978 Query 24764 GACACAGTAGAA-ACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | | ||| ||||| || ||||| |||||||| || || |||||||| Sbjct 898977 GATACTATCGAGCATGTTAAGGCAAAA-ATTCAAGATAAAGAAGGTATTCCCCCCGATCA 898919 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||| || || || || ||||| ||||| ||| | | | | || ||||| Sbjct 898918 ACAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCGTACTTTAGCTGACTATAA 898859 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || |||||||| || || ||||||| ||| |||| Sbjct 898858 TATCCAAAAGGAGTCTACCTTACACTTAGTGCTGCG 898823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449887443561680