Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 342 5e-89
seq1310 152 5e-32
seq454 145 7e-30
seq145 107 2e-18
>seq1762
Length=809008
Score = 342 bits (378), Expect = 5e-89
Identities = 1172/1808 (65%), Gaps = 67/1808 (4%)
Strand=Plus/Minus
Query 138153 TTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCC 138212
||| ||||| || || | |||||||| || ||||| || || | || ||||||||| ||
Sbjct 695481 TTTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCC 695422
Query 138213 CGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGG 138272
|||||||| || || ||| | || | ||||| ||||| ||| ||||| | ||
Sbjct 695421 GGTTTTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGG 695362
Query 138273 TTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGC 138332
|| || | ||| ||||| |||||||| || ||||| || || || |||||| ||
Sbjct 695361 TTCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGC 695302
Query 138333 CATGTTAATTAAA-TTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATAT 138391
||| || || || ||||||| |||||||| ||||| || || || || || || |
Sbjct 695301 CATTTTTATGGAAGTTTTTACCGAA-ATCTCCCAAACGGTTTTATACAGTTCGCGTATGT 695243
Query 138392 GTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCA 138451
| | ||||| | | |||| ||||| || || | | || || ||||| |||
Sbjct 695242 TTTGGGGTATAGATTCAATGTTTTGTATTGAACCACGGCTAGTGATAATTTGATTTTTCA 695183
Query 138452 TGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCT 138511
| ||||| | | | ||| | | | ||| | || || ||||| ||||
Sbjct 695182 TATCATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAACCT 695123
Query 138512 GAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATT 138571
|||| ||||||| | || || ||| ||||| ||| |||| | |||||||| ||||
Sbjct 695122 GAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAGATT 695063
Query 138572 CGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAAT 138631
| || || |||| || || ||||| | ||||| |||||| || | | | ||| |
Sbjct 695062 CATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAGAGT 695003
Query 138632 TCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAG 138691
| |||| ||| || ||| ||| ||| || | | | ||| | ||| | || | |
Sbjct 695002 TGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTCCATAGTTCAGTCG 694943
Query 138692 GTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACG 138751
| ||||| | ||||||||| |||||||| || || || | || ||||| || |
Sbjct 694942 GCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTTCATAAG 694883
Query 138752 AATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAA 138811
||||| ||||| | || ||||| ||| ||| || || | |||||||||||||
Sbjct 694882 TTTCGTAAGGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCATAGTAAA 694823
Query 138812 TAGTTTCGGCAATCTGCTGATTGAGCAATCGG---GCCTCGGCGCTCTCGTACGGCATGC 138868
| ||||| || || ||||| |||| || || | |||| ||||| || ||
Sbjct 694822 TTGTTTCAAATATTTGTTGATT---CAATAGGAATGCTTGTTCGCTTTCGTAAGGATAGC 694766
Query 138869 GGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCA 138928
| | | | || ||||| || | ||||| || || | |||| || ||||| | |
Sbjct 694765 GCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCCTGA 694706
Query 138929 GATTTGACGCTTTTGCGGCTTC---GATAGGATAATAGTTTACATCGATGATTTTGTTTA 138985
||| || ||| |||||| | ||||| | ||||| ||| |||||||| ||||
Sbjct 694705 AATTAGA---TTTCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTA 694649
Query 138986 AATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGT 139045
|||| ||| || |||||| | ||| | |||| |||||||||| | |
Sbjct 694648 AATTCCGCGTCACGGTCTTAGTGACTTCCTTGAGGCGTTTAAAATCGTATTT------TT 694595
Query 139046 TGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCA 139105
|||| | || ||||| | |||| |||||| |||| ||||| || || |
Sbjct 694594 TGTC-----TGGTGT-AACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTA 694541
Query 139106 CTTCGTCGGGGTCGCTG--TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGT 139163
| ||||| || |||| || || |||||||| | || |||||||| || || || ||
Sbjct 694540 CCTCGTCAGG--TGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGT 694483
Query 139164 ACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGT 139223
|| | ||| |||||||| || |||| ||||||||||| || || | ||||||||||||
Sbjct 694482 GCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGTGT 694423
Query 139224 GCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTA-GCTT--GTATTTG 139280
||| || ||||| || | ||||||||| ||| | || | |||| | |||
Sbjct 694422 GCCCGTCTCCACCTGCGATTCTATAATG-----GAAAA---CCAAAGGCTTTGGGCTTTA 694371
Query 139281 ACGCACGTA-----AAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCA 139335
|| | || | || | || | || || ||| ||| | | |||||| ||||
Sbjct 694370 ACTTTCTTATTAGCACGTCCTTCTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCA 694311
Query 139336 CCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTC 139395
|| | | || | || ||||||| | |||||||| | ||||| | | ||
Sbjct 694310 CCCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCAATCCTCATTT 694251
Query 139396 GCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC----GCG 139451
|| | || ||| |||| || | || || ||||||||||| | | ||||| ||
Sbjct 694250 GCTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCT 694191
Query 139452 CG-CCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAG 139510
|| || | | ||||| || || | || || || || ||||||| ||||
Sbjct 694190 CGATGCTCCTCTTTTCCG---GTATTTTTCTTTAAATCCAAA--AATTCAAAAATATCAG 694136
Query 139511 CGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACCTTGATCGA 139567
||||||| || |||| || || || | || ||| ||||| |||||||||||| |
Sbjct 694135 CGTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCA 694076
Query 139568 CGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGT 139627
| | ||| | | |||||||| || |||||||| || ||| || | | ||| || |
Sbjct 694075 CATAACGTGCTACGTTATTGAAAACACGCAACATTGGTACCAAGCCATTTGATGTGCCAT 694016
Query 139628 TGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGC 139687
| |||| || | | || ||| || | ||| ||||| | ||| || || |
Sbjct 694015 TCGTGCCCGCAATCGAAGTGCCTTTAGCGCGTATACAATGAACATTTAAGCCAATACCAC 693956
Query 139688 CGCCAAATTTGGATATTAAAACGCAATCGCGT---AATGTCTCGTATATACCTCTTATGC 139744
| || |||| || || || | || | || |||| |||| || |||
Sbjct 693955 CAGCAGATTTAGAAATCAATGCACATTGATGTGCCGATGT---AAATATGCCATCAATGG 693899
Query 139745 TGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTG 139804
|||||| ||| || | ||||| ||||| || | ||| || |||| || |||| |
Sbjct 693898 AGTCGTCGACCATAGTTAATAGAAAACATGAAGATAATTGTGGCTGTTTGGTAGCGGCAG 693839
Query 139805 CAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGA 139864
|||| || || || || || || || ||| || | ||| | ||| || ||||
Sbjct 693838 CAAAGAGTGTTGGTGAGGCATGTGTAAAGTAACGTTCTGAAAGCAAATTGTATGTGTCGA 693779
Query 139865 TGGCGCTCA-CAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGG 139923
| || | || | |||||| || || ||||| | | || ||||| | |||||| ||
Sbjct 693778 TTGC-CGCATCTATATCCTCACCATGTATACCAATGGCTACACGCATTAACATATGCTGT 693720
Query 139924 ATCCGTTC 139931
||||||
Sbjct 693719 GGCCGTTC 693712
>seq1310
Length=3030561
Score = 152 bits (168), Expect = 5e-32
Identities = 172/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | ||||| || || ||||| || || || | || || || |||| |
Sbjct 644981 ATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGA-GCCATC 645039
Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | |||| || ||| || ||||||||||||||||| || || || |||||
Sbjct 645040 TGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCA 645099
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||||||||||||||| ||||| ||||| |||| ||| | | |||| ||||| ||
Sbjct 645100 ACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGATTACAA 645159
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| |||||||| || || || |||||||||||||| |||| || ||
Sbjct 645160 TATCCAAAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTGCGTGGTGG 645207
>seq454
Length=983520
Score = 145 bits (160), Expect = 7e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| |||| || | ||||| ||||| || || | || || ||| | |
Sbjct 254675 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAACCATCA 254616
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||| ||||| ||||| || ||||| ||||||
Sbjct 254615 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 254556
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|||||||||||||||||||| || ||||| || ||| | | | |||| || || |||
Sbjct 254555 CAACGTTTGATCTTTGCCGGCAAGCAGCTAGAAGATGGACGCACCTTGTCCGACTACAAC 254496
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| ||||||||||| || || || ||||| ||||| ||||| || |||
Sbjct 254495 ATCCAAAAGGAATCTACTCTCCATTTGGTCTTGCGTTTGCGTGGTGGC 254448
Score = 132 bits (146), Expect = 4e-26
Identities = 169/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| |||| || | ||||| ||||| || || | || || ||| | |
Sbjct 254903 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTCGAACCATCA 254844
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || ||||||||||| || ||||| || || || ||||||
Sbjct 254843 GATACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 254784
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTAT 24880
||||||||||| |||||||| ||||| ||||| || || || || |||| || ||
Sbjct 254783 CAACGTTTGATTTTTGCCGGCAAACAACTGGAAGA--CG-GACGCACTTTGTCTGACTAC 254727
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| |||||||| || || || || ||||| ||||| |||||||| ||
Sbjct 254726 AACATCCAAAAGGAGTCTACCCTTCATTTGGTATTGCGTTTGCGCGGTGG 254677
Score = 120 bits (132), Expect = 3e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || | || || || || || || | ||||| ||| | |
Sbjct 253736 ATGCAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCA 253677
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||||||||| ||||| || ||||| ||||||
Sbjct 253676 GATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGATCAA 253617
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCAGATTATAA 24882
|| |||||||| || || || || |||||||| ||| || |||| || || || ||
Sbjct 253616 CAGCGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATG-GACGTACATTATCCGACTACAA 253558
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932
||| ||||||||||| || || || |||||| | || | ||||||||||
Sbjct 253557 CATCCAAAAGGAATCTACCCTCCATTTGGTGCTACGTCTTCGCGGAGGCG 253508
Score = 111 bits (122), Expect = 1e-19
Identities = 143/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || ||||||| | ||||| ||||| || || | ||||| || |||| |
Sbjct 254447 ATGCAAATTTTCGTTAAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGA-GCCATC 254389
Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || | || || || ||||||||||| ||||| || || || |||||
Sbjct 254388 TGATACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAAGGTATTCCCCCAGATCA 254329
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||||||||||||||||||||| || ||| |||| ||| | | |||| || || ||
Sbjct 254328 ACAACGTTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGACGCACTTTGTCTGACTACAA 254269
Query 24883 CATTCAAAAGGAATC 24897
||| ||||| |||||
Sbjct 254268 CATCCAAAAAGAATC 254254
Score = 98.7 bits (108), Expect = 9e-16
Identities = 133/183 (73%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || ||||| || || || ||||| || || || ||| | |
Sbjct 255922 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATTACTCTGGAGGTGGAACCATCT 255863
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | |||| || || |||||||||||||||||||| || || || ||||||
Sbjct 255862 GATACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 255803
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882
|| |||||||| || || || || ||| |||| || | || ||| | || ||||| ||
Sbjct 255802 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACATTATCCGATTACAA 255744
Query 24883 CAT 24885
|||
Sbjct 255743 CAT 255741
>seq145
Length=1338480
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | ||||| || || ||||| || || || || || || ||| || |
Sbjct 899037 ATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCG 898978
Query 24764 GACACAGTAGAA-ACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || | || | | ||| ||||| || ||||| |||||||| || || ||||||||
Sbjct 898977 GATACTATCGAGCATGTTAAGGCAAAA-ATTCAAGATAAAGAAGGTATTCCCCCCGATCA 898919
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||||||||| || || || || ||||| ||||| ||| | | | | || |||||
Sbjct 898918 ACAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCGTACTTTAGCTGACTATAA 898859
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
|| |||||||| || || ||||||| ||| ||||
Sbjct 898858 TATCCAAAAGGAGTCTACCTTACACTTAGTGCTGCG 898823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449887443561680
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