Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq113 104 2e-17 seq278 95.1 1e-14 seq454 84.2 2e-11 >seq113 Length=1127188 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263 || || ||||||| ||||| ||||| | ||| || || | || |||||| || Sbjct 712659 GGAGGATTTTTCAAAATGAACGTGTTCACCTTGTGATTGACTTTGAGGAGACCGTGAAAA 712600 Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323 ||||| |||||||| | || | || | | || | || || ||| | | ||||| Sbjct 712599 CCGCAGGCTTTGCATGCTTGCGAAATTGTTTGATTCCTGGCCGAAACGGTTAAATCAGTT 712540 Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCC 34383 ||||| || || ||||| |||||||| || | ||||| |||||||| || || || ||| Sbjct 712539 TCCGGATTATCGCATTCGGGACACAAGACGTATTTGCGTATGAAACCGTCCAGTAGATCC 712480 Query 34384 TGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 || || || || || || || || || |||||||||||||| || Sbjct 712479 TGCAATTTGCTGGCATCATGCGAACCATTTACGATGAATCGTTCATT 712433 >seq278 Length=1407429 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 103646 CCCGTACACCCCGAGTATGCAATAGAAGCTGCGCGTTTGCGCACTTTTACCGCGTGGCCG 103705 |||| | | ||||||||||| || ||||| |||||||| || | ||| || ||||| Sbjct 840278 CCCGAATATCCCGAGTATGCCATTGAAGCGGCGCGTTTACGTTCGTTTGAAGCTTGGCCA 840219 Query 103706 CGCGGTTTGAAGCAACATCCCGAGATACTTGCCGAAGCTGGTTTCTTTTACACCGGCAAA 103765 ||| |||| |||| |||| || || || || ||||| | ||| || ||||| | Sbjct 840218 CGCAACATGAAACAACGTCCCAAGGATCTGGCTGATGCTGGCTACTTCTATACCGGTATT 840159 Query 103766 AGCGACAAAGTCAAATGCTTTTACTGCAACGGCGGTCTGAACAATTGGGAGCAAGATGAC 103825 | || ||||| |||||| |||| | || || || ||||||| | ||||| Sbjct 840158 GGTGATCGTGTCAAGTGCTTTAGCTGCGGTTGTGGCCTCAAGGATTGGGATGATGATGAT 840099 Query 103826 GACCCGTGGCAACAACACGCGCTTTGGTTC 103855 || |||||| | ||||| ||| | |||||| Sbjct 840098 GAACCGTGGGAGCAACATGCGATGTGGTTC 840069 >seq454 Length=983520 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || |||||||| |||||||||||||| ||| | ||| ||||| Sbjct 254447 ATGCAAATTTTCGTTAAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGAGCCATCT 254388 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || || || ||||| ||||| | ||| |||||| Sbjct 254387 GATACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAAGGTATTCCCCCAGATCAA 254328 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | ||| || || ||| |||| |||| | || || | || |||||| Sbjct 254327 CAACGTTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGACGCACTTTGTCTGACTACAAC 254268 Query 110453 ATTCAAAAAGAATC 110466 || ||||||||||| Sbjct 254267 ATCCAAAAAGAATC 254254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412832513098358