Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq1310 98.7 6e-16
seq145 86.0 4e-12
>seq1310
Length=3030561
Score = 98.7 bits (108), Expect = 6e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||||| ||| |||||| || || || || || || | |||| |||| |||
Sbjct 645189 ACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACCATCTTCC 645130
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
| ||| || ||||||||||||| ||||| || ||| | || | || || ||||| |
Sbjct 645129 AATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 645070
Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948
||||| |||||| | | || | ||| | |||||| || | || ||||||||
Sbjct 645069 ATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTGATGGTCTTA 645010
Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || || || ||||| ||||||||
Sbjct 645009 CCAGTCAGTGTTTTGACAAAAATCTGCAT 644981
>seq145
Length=1338480
Score = 86.0 bits (94), Expect = 4e-12
Identities = 149/215 (69%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| || | ||| | ||| |||||| || || |||||||| | || | || ||||
Sbjct 898825 CAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCTAAAGTACGACCATC 898884
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|||||||| ||||| ||||| || | ||||| || || | || | || || || ||
Sbjct 898885 TTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGAATACCTTCTTTATC 898944
Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
| |||||| || || ||||| || | || || ||||| |||| || |||
Sbjct 898945 TTGAATTTTTGCCTTAAC--ATGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGTGATG 899002
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| ||||||||||| || || || || |||||
Sbjct 899003 GTCTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325685631297914
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |