Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1310 98.7 6e-16 seq145 86.0 4e-12 >seq1310 Length=3030561 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| ||| |||||| || || || || || || | |||| |||| ||| Sbjct 645189 ACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACCATCTTCC 645130 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | ||| || ||||||||||||| ||||| || ||| | || | || || ||||| | Sbjct 645129 AATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 645070 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 ||||| |||||| | | || | ||| | |||||| || | || |||||||| Sbjct 645069 ATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTGATGGTCTTA 645010 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || || ||||| |||||||| Sbjct 645009 CCAGTCAGTGTTTTGACAAAAATCTGCAT 644981 >seq145 Length=1338480 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || | ||| | ||| |||||| || || |||||||| | || | || |||| Sbjct 898825 CAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCTAAAGTACGACCATC 898884 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||||||| ||||| ||||| || | ||||| || || | || | || || || || Sbjct 898885 TTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGAATACCTTCTTTATC 898944 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | |||||| || || ||||| || | || || ||||| |||| || ||| Sbjct 898945 TTGAATTTTTGCCTTAAC--ATGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGTGATG 899002 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||||||||| || || || || ||||| Sbjct 899003 GTCTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325685631297914