Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 150 2e-31
seq454 129 6e-25
seq1310 107 2e-18
>seq1762
Length=809008
Score = 150 bits (166), Expect = 2e-31
Identities = 694/1083 (64%), Gaps = 40/1083 (4%)
Strand=Plus/Minus
Query 150777 ACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACG 150836
|||| ||||| || || || || | ||||||||| || | || || |||||| |
Sbjct 695077 ACGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTG 695018
Query 150837 CCACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGT 150896
| | || || || || |||| || | ||| | || ||| |||||||| | ||| |
Sbjct 695017 CAAGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAAT 694958
Query 150897 CCCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTT 150956
||||| |||||| ||| ||||| ||| || || || || |||| ||| |
Sbjct 694957 TCCATAGTTCAGTCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCG 694898
Query 150957 TGCTACCGGCAAACGTGCTATAAGGCTCACTAACAGAT--GCCAGTTCGTAACTGGCCTC 151014
||| || | || |||||| || || | |||| |||| | ||||| ||
Sbjct 694897 GTGAACCTTCATAAGTTTCGTAAGGCCCA--AATTTTTCAGCCAATTCGCAGCTGGCTTC 694840
Query 151015 GAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCT 151074
| ||| ||| || | |||||| ||||||| ||||||||| | || |||||
Sbjct 694839 TAAAGCACCATAGTAAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCT 694780
Query 151075 CACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGAT 151134
|||| || ||||| | | ||||| || || |||||||| | || || |||||
Sbjct 694779 TTCGTAAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGAT 694720
Query 151135 GGGACGATGGCGCATATTAGAtttttttGCAGTTTCA---ATAGGGTAGAAATTGCGATC 151191
|||||||| | | ||||||||| || || |||| | || ||| || |||
Sbjct 694719 CGGACGATGCCTGAAATTAGATTTCTTGGC---TTCAGGCAATGGATAGTGGTTTATATC 694663
Query 151192 AATAATTTTATTCAAACTATTCACTACA-TGTT--TGACCACAGTGTGCAATAGTTGAAA 151248
||| |||||||| ||| | | || | || |||| | || | ||| |||
Sbjct 694662 AATGATTTTATTTAAATTCCGCGTCACGGTCTTAGTGACTTCCTTGAGGC---GTTTAAA 694606
Query 151249 ATCAAAAGTATCAT-TATTG--ATATATTTATTGACGGCAATCGACGCTAGATTACATAC 151305
||| | | | | | || | | | |||||| ||||||||| |||| ||| |||||
Sbjct 694605 ATCGTATTTTTTGTCTGGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCATAC 694546
Query 151306 GGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTAT 151365
|| ||||| || || |||| | || ||||| | || ||||| |||||||| ||
Sbjct 694545 AGCTACCTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAAT 694486
Query 151366 CAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGG 151425
|| ||| |||||| || || | || ||||| ||||| |||||||| |||||
Sbjct 694485 TGTGCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGG 694426
Query 151426 TGTGCCGGTTTCGGCTTGAATTTCTATAATGTTTCGCATTAATGTAA--CCGCGGGCATT 151483
|||||| || || | || |||||||||| | | || || | |||| ||
Sbjct 694425 TGTGCCCGTCTCCACCTGCGATTCTATAATG----GAA--AACCAAAGGCTTTGGGCTTT 694372
Query 151484 TGCTCGCGAA-----ACTGGCCTTTATCCTCATAATGTTTGTACCAGTATTCAAAGTCAT 151538
|| | | || | |||| | ||||| | | |||| | | ||| || || |
Sbjct 694371 AACTTTCTTATTAGCAC-GTCCTTCTTGTTCATATTTTGTGTATAACTTTTCGAATTCTT 694313
Query 151539 CACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATAC-CG 151597
|||| | |||| | ||||||| | ||||||||||||||||| || | |
Sbjct 694312 CACCCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCA-ATCCTCA 694254
Query 151598 TTTTCTTCAACGCGTTTCATAAATATATCCGGAACCCATAATGCGTTCATCAAATCACGC 151657
||| ||||||| || |||||||||| || || | ||| || || | | ||||| |
Sbjct 694253 TTTGCTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTA 694194
Query 151658 GCTTTGGTG-TCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCA 151716
|| | | || || || | || | ||| | | |||| || | ||| ||
Sbjct 694193 GC-TCGATGCTCCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGC 694135
Query 151717 ATGCCACGGTTCAACGTACACTGCTTGGGCGCCTTTTCGCTT---GCCACCTTGATCCAC 151773
||||| || || | ||| | || || ||| ||| || |||||||||||||||
Sbjct 694134 GTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCAC 694075
Query 151774 GTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTT 151833
| ||| | | ||||| ||||| |||| |||||||| || || | | ||||| ||
Sbjct 694074 ATAACGTGCTACGTTATTGAAAACACGCAACATTGGTACCAAGCCATTTGATGTGCCATT 694015
Query 151834 CGT 151836
|||
Sbjct 694014 CGT 694012
>seq454
Length=983520
Score = 129 bits (142), Expect = 6e-25
Identities = 168/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243
||| || || |||||||| || ||||| | |||||||| ||||| |||||||| |||
Sbjct 254448 GCCACCACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 254507
Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302
|| |||| || | ||||| || || || || ||| |||||| |||||| ||||| ||||
Sbjct 254508 CAAGGTGCGTCCA-TCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAG 254566
Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362
| || ||||| ||||| || || || | | || | || |||| ||||| |
Sbjct 254567 GAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAA 254626
Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
| || | ||| | || ||||||||||| || || ||||| |||||||||
Sbjct 254627 CCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCATA 254676
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || || |||||||| || ||||||| ||||| || ||||| |||||||| || |
Sbjct 254677 CCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 254736
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| |||| |||||| |||||||| || ||| | |||| |||||| ||||| || ||
Sbjct 254737 AAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGA 254796
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||| || || || || || | | || | || |||| ||||| ||
Sbjct 254797 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGACC 254856
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|| | ||| | || ||||||||||| || || ||||| |||||||||
Sbjct 254857 TCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCATA 254904
Score = 93.3 bits (102), Expect = 4e-14
Identities = 139/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 137218 GATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGC 137276
||||||||||| |||||||| || || |||| || | ||||| | || || || ||
Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAACTGCTTGCCGGC 254312
Query 137277 ATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAG 137336
| |||||| |||||| ||||| || || || ||||| ||||| ||||| || |
Sbjct 254313 AAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCAC 254372
Query 137337 CTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTT 137396
| || | || || | || || ||||| | || | || ||||||||||| |||||
Sbjct 254373 ATTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTT 254432
Query 137397 TACGAATATTTGCAT 137411
||||| ||||||||
Sbjct 254433 AACGAAAATTTGCAT 254447
>seq1310
Length=3030561
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || || | |||||| || || |||| || || || ||||| || ||||||||| |
Sbjct 645207 CCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGAC 645148
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| |||| ||||| | |||||| || || |||||| |||||| ||||| || ||
Sbjct 645147 AAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 645088
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||||||||| ||||| ||| | | ||| | ||||| | || || ||
Sbjct 645087 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACC 645028
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | ||| | ||||| || |||| |||||| || || || |||||
Sbjct 645027 TCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488532971119200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |