Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq1762 150 2e-31 seq454 129 6e-25 seq1310 107 2e-18 >seq1762 Length=809008 Score = 150 bits (166), Expect = 2e-31 Identities = 694/1083 (64%), Gaps = 40/1083 (4%) Strand=Plus/Minus Query 150777 ACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACG 150836 |||| ||||| || || || || | ||||||||| || | || || |||||| | Sbjct 695077 ACGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTG 695018 Query 150837 CCACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGT 150896 | | || || || || |||| || | ||| | || ||| |||||||| | ||| | Sbjct 695017 CAAGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAAT 694958 Query 150897 CCCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTT 150956 ||||| |||||| ||| ||||| ||| || || || || |||| ||| | Sbjct 694957 TCCATAGTTCAGTCGGCTTTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCG 694898 Query 150957 TGCTACCGGCAAACGTGCTATAAGGCTCACTAACAGAT--GCCAGTTCGTAACTGGCCTC 151014 ||| || | || |||||| || || | |||| |||| | ||||| || Sbjct 694897 GTGAACCTTCATAAGTTTCGTAAGGCCCA--AATTTTTCAGCCAATTCGCAGCTGGCTTC 694840 Query 151015 GAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCT 151074 | ||| ||| || | |||||| ||||||| ||||||||| | || ||||| Sbjct 694839 TAAAGCACCATAGTAAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCT 694780 Query 151075 CACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGAT 151134 |||| || ||||| | | ||||| || || |||||||| | || || ||||| Sbjct 694779 TTCGTAAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGAT 694720 Query 151135 GGGACGATGGCGCATATTAGAtttttttGCAGTTTCA---ATAGGGTAGAAATTGCGATC 151191 |||||||| | | ||||||||| || || |||| | || ||| || ||| Sbjct 694719 CGGACGATGCCTGAAATTAGATTTCTTGGC---TTCAGGCAATGGATAGTGGTTTATATC 694663 Query 151192 AATAATTTTATTCAAACTATTCACTACA-TGTT--TGACCACAGTGTGCAATAGTTGAAA 151248 ||| |||||||| ||| | | || | || |||| | || | ||| ||| Sbjct 694662 AATGATTTTATTTAAATTCCGCGTCACGGTCTTAGTGACTTCCTTGAGGC---GTTTAAA 694606 Query 151249 ATCAAAAGTATCAT-TATTG--ATATATTTATTGACGGCAATCGACGCTAGATTACATAC 151305 ||| | | | | | || | | | |||||| ||||||||| |||| ||| ||||| Sbjct 694605 ATCGTATTTTTTGTCTGGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCATAC 694546 Query 151306 GGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTAT 151365 || ||||| || || |||| | || ||||| | || ||||| |||||||| || Sbjct 694545 AGCTACCTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAAT 694486 Query 151366 CAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGG 151425 || ||| |||||| || || | || ||||| ||||| |||||||| ||||| Sbjct 694485 TGTGCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGG 694426 Query 151426 TGTGCCGGTTTCGGCTTGAATTTCTATAATGTTTCGCATTAATGTAA--CCGCGGGCATT 151483 |||||| || || | || |||||||||| | | || || | |||| || Sbjct 694425 TGTGCCCGTCTCCACCTGCGATTCTATAATG----GAA--AACCAAAGGCTTTGGGCTTT 694372 Query 151484 TGCTCGCGAA-----ACTGGCCTTTATCCTCATAATGTTTGTACCAGTATTCAAAGTCAT 151538 || | | || | |||| | ||||| | | |||| | | ||| || || | Sbjct 694371 AACTTTCTTATTAGCAC-GTCCTTCTTGTTCATATTTTGTGTATAACTTTTCGAATTCTT 694313 Query 151539 CACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATAC-CG 151597 |||| | |||| | ||||||| | ||||||||||||||||| || | | Sbjct 694312 CACCCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCA-ATCCTCA 694254 Query 151598 TTTTCTTCAACGCGTTTCATAAATATATCCGGAACCCATAATGCGTTCATCAAATCACGC 151657 ||| ||||||| || |||||||||| || || | ||| || || | | ||||| | Sbjct 694253 TTTGCTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTA 694194 Query 151658 GCTTTGGTG-TCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCA 151716 || | | || || || | || | ||| | | |||| || | ||| || Sbjct 694193 GC-TCGATGCTCCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGC 694135 Query 151717 ATGCCACGGTTCAACGTACACTGCTTGGGCGCCTTTTCGCTT---GCCACCTTGATCCAC 151773 ||||| || || | ||| | || || ||| ||| || ||||||||||||||| Sbjct 694134 GTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCAC 694075 Query 151774 GTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTT 151833 | ||| | | ||||| ||||| |||| |||||||| || || | | ||||| || Sbjct 694074 ATAACGTGCTACGTTATTGAAAACACGCAACATTGGTACCAAGCCATTTGATGTGCCATT 694015 Query 151834 CGT 151836 ||| Sbjct 694014 CGT 694012 >seq454 Length=983520 Score = 129 bits (142), Expect = 6e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || |||||||| || ||||| | |||||||| ||||| |||||||| ||| Sbjct 254448 GCCACCACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 254507 Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 || |||| || | ||||| || || || || ||| |||||| |||||| ||||| |||| Sbjct 254508 CAAGGTGCGTCCA-TCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAG 254566 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||| ||||| || || || | | || | || |||| ||||| | Sbjct 254567 GAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAA 254626 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 | || | ||| | || ||||||||||| || || ||||| ||||||||| Sbjct 254627 CCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCATA 254676 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || |||||||| || ||||||| ||||| || ||||| |||||||| || | Sbjct 254677 CCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 254736 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| |||||||| || ||| | |||| |||||| ||||| || || Sbjct 254737 AAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGA 254796 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || || || || | | || | || |||| ||||| || Sbjct 254797 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGACC 254856 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | || ||||||||||| || || ||||| ||||||||| Sbjct 254857 TCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCATA 254904 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 137218 GATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGC 137276 ||||||||||| |||||||| || || |||| || | ||||| | || || || || Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAACTGCTTGCCGGC 254312 Query 137277 ATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAG 137336 | |||||| |||||| ||||| || || || ||||| ||||| ||||| || | Sbjct 254313 AAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCAC 254372 Query 137337 CTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTT 137396 | || | || || | || || ||||| | || | || ||||||||||| ||||| Sbjct 254373 ATTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTT 254432 Query 137397 TACGAATATTTGCAT 137411 ||||| |||||||| Sbjct 254433 AACGAAAATTTGCAT 254447 >seq1310 Length=3030561 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || || |||| || || || ||||| || ||||||||| | Sbjct 645207 CCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGAC 645148 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| | |||||| || || |||||| |||||| ||||| || || Sbjct 645147 AAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 645088 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||||| ||| | | ||| | ||||| | || || || Sbjct 645087 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACC 645028 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||| || |||| |||||| || || || ||||| Sbjct 645027 TCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488532971119200