Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq454 165 2e-35 seq1310 154 3e-32 seq145 154 3e-32 seq1509 91.5 3e-13 >seq454 Length=983520 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | |||||||| || || || || ||||| || || || || || || |||| Sbjct 254675 TACCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 254734 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | |||||||| |||||||| || ||||| || | | |||||||||||| | Sbjct 254735 ACAAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGG 254794 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| || || ||||| || || ||||| ||||| | Sbjct 254795 GAATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGA 254854 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || || ||||| ||||| ||||| || || || ||||| Sbjct 254855 CCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | |||||||| || || || ||||||||||| || || || || || || || Sbjct 254449 CCACCACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 254508 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || |||||||| || || || |||||||| | | ||||||||||||||| Sbjct 254509 AAGGTGCGTCCATCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 254568 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||| || || ||||| ||||| || Sbjct 254569 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAACC 254628 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || || ||||| ||||| ||||| || || || ||||| Sbjct 254629 TCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254675 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || || || || |||||||| || || || || || || ||| Sbjct 253510 CCTCCGCGAAGACGTAGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAT 253569 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| || || || ||||| || || | | |||||||||||||| Sbjct 253570 AATGTACGTCCATCTTCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGG 253629 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || || ||||| || || ||||| ||||| ||| Sbjct 253630 ATACCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACT 253689 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| ||||| ||||| || || || ||||| Sbjct 253690 TCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 82617 GATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCA 82676 |||||||| || || || || ||||| | | | | || ||||| | || || || ||| Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313 Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 ||||| | | |||||||||||| || || |||||||| ||||| || || || || ||| Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373 Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 || ||||| |||||| || || |||||||| || || || ||||| ||||| || || Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433 Query 82797 ACAAATATCTGCAT 82810 || || || ||||| Sbjct 254434 ACGAAAATTTGCAT 254447 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688 || || ||||| |||| | | || ||||| | || || ||||| || || | | Sbjct 255741 ATGTTGTAATCGGATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGC 255800 Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 ||||||||||| || || ||||| || ||||| ||||| || || |||||||| || ||| Sbjct 255801 TGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGGTA 255860 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| ||||| || |||| ||| || |||||||| || | ||||| || || || ||| Sbjct 255861 TCAGATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGC 255920 Query 82809 ATT 82811 ||| Sbjct 255921 ATT 255923 >seq1310 Length=3030561 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||||| || ||||| || || || || || || ||||| ||||| | Sbjct 645209 TACCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGG 645150 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | ||| ||||| | |||||| || || ||||| | | |||||||||||| | Sbjct 645149 ACAAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTG 645090 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| || || ||||| |||||||| || || ||| || || | Sbjct 645089 GGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGA 645030 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||||||| || ||||| || |||| || || ||||| ||||||||| Sbjct 645029 CCTCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCATT 644980 >seq145 Length=1338480 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | |||||| |||||||| | ||||| || || || |||||||| |||| | Sbjct 898811 CCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCT 898870 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | ||| ||||| ||||||||||| || || |||| | ||||||||| || || Sbjct 898871 AAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGA 898930 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| ||||||||||| ||||| || |||| || || ||||| ||||| || Sbjct 898931 ATACCTTCTTTATCTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGACC 898990 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | ||| || ||||| || || | || || || || || |||||| Sbjct 898991 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCATT 899038 >seq1509 Length=4395057 Score = 91.5 bits (100), Expect = 3e-13 Identities = 237/353 (67%), Gaps = 19/353 (5%) Strand=Plus/Plus Query 198180 AGAGAACTGTCGGATAATTTTTGTTACTATAATAAACATTACGATAGCGTACA--GTCTA 198237 |||||| || | |||||||||||||| || ||| |||||||||||| || | | || Sbjct 618962 AGAGAATTGGCAGATAATTTTTGTTATTACAATGAACATTACGATAATCTAAAAGGATTA 619021 Query 198238 CTCACGCATGGGCTAGAAGAACATTAGAAGATCACATTAATGATCCTAGAAAGTATATCT 198297 | | || ||||| | ||| | || |||||| || ||| || || | || Sbjct 619022 C--ATGCTTGGGCAGCTAAAACGCTTGATGATCACCGCAAGGATA----AACGT-TCTCC 619074 Query 198298 ATTCTATTAAAC------AACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCAT 198351 ||| | || || |||| | || | ||||| ||| ||| |||||||||| Sbjct 619075 TGCCTAC-ACACTGGCTGAATTCGAGCAAGCTCACACACACGACGATCTTTGGAATGCAT 619133 Query 198352 CGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTA 198411 |||| | ||| | || | ||||| ||||||||| | ||| | ||||||| ||||| | Sbjct 619134 CGCAGTTGCAGTTAGTACGTGAAGGCAAAATGCATGGATTTCTGCGAATGTATTGGGCCA 619193 Query 198412 AAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTATAG-TATCTATCTA 198470 |||| ||||| |||||| | || || ||||| || || | ||| ||| | || Sbjct 619194 AAAAAATACTCGAATGGTCTTCTACGCCAGAAGAGGCACTG-GAAGTAGCTATTCTTTTA 619252 Query 198471 AACAATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT-TGTA 198522 ||| ||||||| | ||||| ||||| || ||||| || ||| |||| Sbjct 619253 AACGATAAGTATAGTTTGGACGGTCGAGATCCAAATGGATATGTTGGTATGTA 619305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981804481132234