Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1509 86.0 1e-11 >seq1509 Length=4395057 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/198 (71%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 183010 ACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCAT 183069 ||||| ||| ||| ||||||||||| || | ||| | | | ||||| ||||||||| Sbjct 619109 ACACACGACGATCTTTGGAATGCATCGCAGTTGCAGTTAGTACGTGAAGGCAAAATGCAT 619168 Query 183070 AGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGAT 183129 | ||| | |||||||| ||||| ||||| ||||| |||||| | || || ||||| Sbjct 619169 GGATTTCTGCGAATGTATTGGGCCAAAAAAATACTCGAATGGTCTTCTACGCCAGAAGAG 619228 Query 183130 GCTTTGAGTTATAG-TATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAA 183188 || || | ||| ||| | | ||| ||||||| | |||||| ||||| || Sbjct 619229 GCACTG-GAAGTAGCTATTCTTTTAAACGATAAGTATAGTTTGGACGGTCGAGATCCAAA 619287 Query 183189 CGGATACGTAGGT-TGTA 183205 ||||| || ||| |||| Sbjct 619288 TGGATATGTTGGTATGTA 619305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903390805492160