Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq454 100 3e-16
seq1310 91.5 1e-13
>seq454
Length=983520
Score = 100 bits (110), Expect = 3e-16
Identities = 148/208 (71%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512
||||| | ||| || || || || || ||||| ||| || || ||| || || |
Sbjct 253531 AAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGG--ATAATGTACGTCCATCTTCCA 253588
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
||||||| || ||| |||| | ||||| || || |||||||| ||||||||||| ||
Sbjct 253589 GCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTGTCTTGGA 253648
Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
|||| ||| | | ||| | || || | || || || || | ||||| ||| ||||
Sbjct 253649 TCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACTTCCAAGGTGATGGTCTTGC 253708
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| |||| ||| || |||||||| |||||
Sbjct 253709 CCGTCAAAGTCTTAACGAAAATTTGCAT 253736
Score = 95.1 bits (104), Expect = 1e-14
Identities = 140/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 133467 GACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGC 133525
|| ||||| || || ||||| || || ||| | | | || || | ||||||||| ||
Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAACTGCTTGCCGGC 254312
Query 133526 GTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAG 133585
| || | || || || || || || || ||||||||||| ||| || ||| |
Sbjct 254313 AAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCAC 254372
Query 133586 CTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTT 133645
| ||||| || || | ||||| || || | ||||| |||||||||||||| ||||||
Sbjct 254373 ATTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTT 254432
Query 133646 TACGAAAATCTGCATG 133661
|||||||| ||||||
Sbjct 254433 AACGAAAATTTGCATG 254448
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | || || || || || || ||||| ||| || ||| | | | || || ||
Sbjct 254470 AAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCA-TCTTCTAG 254528
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||||||| || | || | || || || || ||||| || ||||||||||| |||
Sbjct 254529 CTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGAT 254588
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||| | | ||| | || || | || || || || | |||| |||||||||
Sbjct 254589 CTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAACCTCCAAAGTGATGGTTTTGCC 254648
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||| || || ||||| || |||||
Sbjct 254649 GGTCAAGGTCTTAACGAAGATTTGCAT 254675
>seq1310
Length=3030561
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/208 (71%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||| ||||| || || |||||||||||| || ||| ||| | || || |
Sbjct 645186 AAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACCA-TCTTCCAA 645128
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|| ||||| ||| | || | || || || || || ||||| ||||| ||||| |||
Sbjct 645127 TTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGAT 645068
Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||| |||| || | || | ||||| | ||||| || || | |||| ||| || |
Sbjct 645067 -TTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTGATGGTCTTAC 645009
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| ||||| ||||| || |||||||||||
Sbjct 645008 CAGTCAGTGTTTTGACAAAAATCTGCAT 644981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483409886775440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |