Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 190 5e-43
seq333 105 2e-17
seq1387 95.1 3e-14
seq1178 84.2 5e-11
>seq1762
Length=809008
Score = 190 bits (210), Expect = 5e-43
Identities = 567/863 (66%), Gaps = 19/863 (2%)
Strand=Plus/Plus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
||||| || || || |||||||||||| | |||||||| | ||||| | || ||
Sbjct 693652 TATTTCGGGTTTAAGACTCTTGAACGTTCCTATTTACTCAAGTTGAATGGTAAAATTGTT 693711
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423
||||| || || || ||||| | ||||| || |||||||| ||||| | ||||| |
Sbjct 693712 GAACGGCCACAGCATATGTTAATGCGTGTAGCCATTGGTATACATGGTGAGGATATAGAT 693771
Query 110424 GCTGTTATTGAATGTTATGATGTA--TTAAGTAAAAAGAAAGCTATTCATGCTACTCCTA 110481
|| | || || || || | || || || | || ||||| | || |
Sbjct 693772 GCGGCAATCGACACATACAATTTGCTTTCAG--AACGTTACTTTACACATGCCTCACCAA 693829
Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541
| || ||| || | || || |||||| |||| || ||||| || ||
Sbjct 693830 CACTCTTTGCTGCCGCTACCAAACAGCCACAATTATCTTCATGTTTTCTATTAACTATGG 693889
Query 110542 ACGATGATTCTATTGAAGG--TATTTATGAT--GCTCTTAAAGAAACTGCTCTTATTTCT 110597
||| || || ||||| || |||||| || || | | || ||| | ||||||
Sbjct 693890 TCGACGACTCCATTGATGGCATATTTAC-ATCGGCACATCAATG---TGCATTGATTTCT 693945
Query 110598 AAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATC 110657
||| |||| || ||||| | | |||||| ||| ||| | ||||| | ||
Sbjct 693946 AAATCTGCTGGTGGTATTGGCTTAAATGTTCATTGTATACGCGCTAAAGGCACTTCGATT 694005
Query 110658 GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717
|| |||| || | |||| ||| | || |||||||| | || ||||| ||
Sbjct 694006 GCGGGCACGAATGGCACATCAAATGGCTTGGTACCAATGTTGCGTGTTTTCAATAACGTA 694065
Query 110718 GCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774
||| |||||| |||||||||| ||| || || | |||||||| || | ||
Sbjct 694066 GCACGTTATGTGGATCAAGGTGGCGGTAAACGACCAGGAGCTTTTGCTATATACTTGGAG 694125
Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAA 110834
|||||||| | ||||| |||||||| || || | |||||| ||| || ||
Sbjct 694126 CCTTGGCACGCTGATATTTTTGAATTTTTGGATTTAAAGAAAAATACCGGAAAAGAGGAG 694185
Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894
|| |||| | |||||||||||||| ||||||| | || ||||| ||||| ||||||
Sbjct 694186 CATCGAGCTAGAGATTTATTTTATGCTTTGTGGATACCTGACTTATTTATGAAGCGTGTT 694245
Query 110895 CAAGAAAATG-GCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGT 110953
||| ||||| | || ||||| | |||||||| ||| | ||| || || || ||
Sbjct 694246 GAAGCAAATGAGGAT-TGGTCATTAATGTGTCCACATAAGTGTCCCGGATTACACGAAGT 694304
Query 110954 ATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGT-TTCGCA 111012
| || |||| || ||| | | ||| |||||||||| ||||||| | || | |
Sbjct 694305 TTGGGGTGAAGAATTCGAAAAGTTATACACAAAATATGAACAAGAAGG-ACGTGCTAATA 694363
Query 111013 AACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAA 111072
| || || ||| ||| |||||||| || | ||||| || || || || || |
Sbjct 694364 AGAAAGTTAAAGCCCAAAGCCTTTGGTTTTCCATTATAGAATCGCAGGTGGAGACGGGCA 694423
Query 111073 CTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAA 111132
| || ||||| || ||||| ||| | |||| | || ||||||| |||| | || |
Sbjct 694424 CACCGTATATGTTATATAAGGATGCTTGTAATAGAAAGAGTAATCAACAGAATATTGGCA 694483
Query 111133 CAATTAAGTCTAGTAATTTGTGC 111155
||||||| | |||||||| |||
Sbjct 694484 CAATTAAATGCAGTAATTTATGC 694506
Score = 84.2 bits (92), Expect = 5e-11
Identities = 107/143 (75%), Gaps = 6/143 (4%)
Strand=Plus/Plus
Query 112981 TTATGAAACATGGAACTACA-AACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACT 113039
||| ||||||||| ||| |||||| |||| | ||||| ||||| || ||||| ||
Sbjct 694982 TTAAGAAACATGGTG-TACGCAACTCTTTACTACTTGCACCCATGCCAACCGCTTCAACG 695040
Query 113040 GCACAGATTCTCGGTAATAATGAATGTTTCGAGCCAATTACAAGT--AATATTTATGTCC 113097
||||| || | ||||||||||||| ||| ||||| |||| | ||||||||| |
Sbjct 695041 GCACAAATAATGGGTAATAATGAATCTTTTGAGCC--GTACACCTCCAATATTTATACTC 695098
Query 113098 GACGTGTTCTAGCAGGTGAGTTT 113120
| ||||| || | |||||||||
Sbjct 695099 GCCGTGTGCTTTCCGGTGAGTTT 695121
>seq333
Length=5851039
Score = 105 bits (116), Expect = 2e-17
Identities = 117/155 (75%), Gaps = 6/155 (4%)
Strand=Plus/Minus
Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395
|||||| |||| ||| | |||||||||||| |||||||| |||| |||||||||||
Sbjct 3373648 TTCAATCGGCAGCCAACGCTGCATAAAATGAGTATGATGGGTCATCGTGTCAAAGTATTG 3373589
Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCT---TATAATGCGGATTTT 305452
| | | |||||| || | ||| || ||||||| || ||||| || |||||
Sbjct 3373588 CCCTGGTCGACATTCCGTATGAATTTAT---CTTGTACCTCTCCGTATAACGCTGATTTC 3373532
Query 305453 GATGGAGATGAAATGAATATGCATGTACCTCAATC 305487
||||| ||||||||||| ||||||| || |||||
Sbjct 3373531 GATGGTGATGAAATGAACTTGCATGTGCCACAATC 3373497
Score = 95.1 bits (104), Expect = 3e-14
Identities = 173/252 (69%), Gaps = 6/252 (2%)
Strand=Plus/Minus
Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945
|| || | |||| |||| ||||| | ||||| || || | || ||||| | ||
Sbjct 3374092 TTGCAGTTTCATGTTGCCACATTGGTCGATAACGACATGCCCGG---TATGCCACGAGCT 3374036
Query 304946 ---CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGT 305002
|||| ||| || | |||| | || | ||||| ||| | || || ||||| |||
Sbjct 3374035 ATGCAAAAATCCGGAAAACCTCTTAAAGCTATTAAAGCGCGCTTGAAGGGAAAAGAAGGT 3373976
Query 305003 CGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACA 305062
||||||||||||||| | ||||| || ||||| ||||| |||| | | ||||||||||
Sbjct 3373975 CGTATTCGAGGTAATTTGATGGGTAAGCGTGTAGATTTCTCTGCACGTACTGTAATCACA 3373916
Query 305063 CCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTA 305122
|| ||| | | | || | || || | || || ||| | ||||| ||| ||
Sbjct 3373915 CCAGATCCGAATTTGCGTATCGATCAAGTTGGCGTGCCACGTTCCATTGCGCAAAACTTA 3373856
Query 305123 ACATTTCCAGAG 305134
||||||||||||
Sbjct 3373855 ACATTTCCAGAG 3373844
>seq1387
Length=2789183
Score = 95.1 bits (104), Expect = 3e-14
Identities = 120/164 (73%), Gaps = 6/164 (4%)
Strand=Plus/Minus
Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368
|||||| ||| ||||| || | || ||| | |||||| | || || ||||||||
Sbjct 1016726 CATTTGCGTGATAATGACCTTGTAATTTTTAATCGCCAACCAACTCTACACAAAATGTCA 1016667
Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428
||||||| |||| |||||||| ||| | | | |||||||| | ||| || ||
Sbjct 1016666 ATGATGGGTCATCGCGTCAAAGTCTTACCGTGGTCCACATTTCGTATGAATCTAT---CT 1016610
Query 305429 TGTAC---GCCTTATAATGCGGATTTTGATGGAGATGAAATGAA 305469
|| || |||||||||||| || |||||||| |||||||||||
Sbjct 1016609 TGCACTTCGCCTTATAATGCTGACTTTGATGGCGATGAAATGAA 1016566
>seq1178
Length=3319829
Score = 84.2 bits (92), Expect = 5e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389
|| || |||||| | ||||| || || || |||||||| || ||| ||| ||| |||
Sbjct 2252766 GTGCTCTTCAATCGCCAACCCTCTCTACACAAAATGTCCATTATGTGTCACCAAGCTAAA 2252707
Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449
|| | | | ||||| || || |||| | | || || ||||| || ||||| |||
Sbjct 2252706 GTGCAACCGCAACGTACATTCCGTTTCAATGAATGCGCCTGCACGCCATACAATGCAGAT 2252647
Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485
|| ||||| |||||||||||| | ||| | || |||
Sbjct 2252646 TTCGATGGTGATGAAATGAATTTACATTTGCCACAA 2252611
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186785337893566
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |