Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1762 190 5e-43 seq333 105 2e-17 seq1387 95.1 3e-14 seq1178 84.2 5e-11 >seq1762 Length=809008 Score = 190 bits (210), Expect = 5e-43 Identities = 567/863 (66%), Gaps = 19/863 (2%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||| || || || |||||||||||| | |||||||| | ||||| | || || Sbjct 693652 TATTTCGGGTTTAAGACTCTTGAACGTTCCTATTTACTCAAGTTGAATGGTAAAATTGTT 693711 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||| || || || ||||| | ||||| || |||||||| ||||| | ||||| | Sbjct 693712 GAACGGCCACAGCATATGTTAATGCGTGTAGCCATTGGTATACATGGTGAGGATATAGAT 693771 Query 110424 GCTGTTATTGAATGTTATGATGTA--TTAAGTAAAAAGAAAGCTATTCATGCTACTCCTA 110481 || | || || || || | || || || | || ||||| | || | Sbjct 693772 GCGGCAATCGACACATACAATTTGCTTTCAG--AACGTTACTTTACACATGCCTCACCAA 693829 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 | || ||| || | || || |||||| |||| || ||||| || || Sbjct 693830 CACTCTTTGCTGCCGCTACCAAACAGCCACAATTATCTTCATGTTTTCTATTAACTATGG 693889 Query 110542 ACGATGATTCTATTGAAGG--TATTTATGAT--GCTCTTAAAGAAACTGCTCTTATTTCT 110597 ||| || || ||||| || |||||| || || | | || ||| | |||||| Sbjct 693890 TCGACGACTCCATTGATGGCATATTTAC-ATCGGCACATCAATG---TGCATTGATTTCT 693945 Query 110598 AAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATC 110657 ||| |||| || ||||| | | |||||| ||| ||| | ||||| | || Sbjct 693946 AAATCTGCTGGTGGTATTGGCTTAAATGTTCATTGTATACGCGCTAAAGGCACTTCGATT 694005 Query 110658 GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717 || |||| || | |||| ||| | || |||||||| | || ||||| || Sbjct 694006 GCGGGCACGAATGGCACATCAAATGGCTTGGTACCAATGTTGCGTGTTTTCAATAACGTA 694065 Query 110718 GCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774 ||| |||||| |||||||||| ||| || || | |||||||| || | || Sbjct 694066 GCACGTTATGTGGATCAAGGTGGCGGTAAACGACCAGGAGCTTTTGCTATATACTTGGAG 694125 Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAA 110834 |||||||| | ||||| |||||||| || || | |||||| ||| || || Sbjct 694126 CCTTGGCACGCTGATATTTTTGAATTTTTGGATTTAAAGAAAAATACCGGAAAAGAGGAG 694185 Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 || |||| | |||||||||||||| ||||||| | || ||||| ||||| |||||| Sbjct 694186 CATCGAGCTAGAGATTTATTTTATGCTTTGTGGATACCTGACTTATTTATGAAGCGTGTT 694245 Query 110895 CAAGAAAATG-GCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGT 110953 ||| ||||| | || ||||| | |||||||| ||| | ||| || || || || Sbjct 694246 GAAGCAAATGAGGAT-TGGTCATTAATGTGTCCACATAAGTGTCCCGGATTACACGAAGT 694304 Query 110954 ATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGT-TTCGCA 111012 | || |||| || ||| | | ||| |||||||||| ||||||| | || | | Sbjct 694305 TTGGGGTGAAGAATTCGAAAAGTTATACACAAAATATGAACAAGAAGG-ACGTGCTAATA 694363 Query 111013 AACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAA 111072 | || || ||| ||| |||||||| || | ||||| || || || || || | Sbjct 694364 AGAAAGTTAAAGCCCAAAGCCTTTGGTTTTCCATTATAGAATCGCAGGTGGAGACGGGCA 694423 Query 111073 CTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAA 111132 | || ||||| || ||||| ||| | |||| | || ||||||| |||| | || | Sbjct 694424 CACCGTATATGTTATATAAGGATGCTTGTAATAGAAAGAGTAATCAACAGAATATTGGCA 694483 Query 111133 CAATTAAGTCTAGTAATTTGTGC 111155 ||||||| | |||||||| ||| Sbjct 694484 CAATTAAATGCAGTAATTTATGC 694506 Score = 84.2 bits (92), Expect = 5e-11 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 112981 TTATGAAACATGGAACTACA-AACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACT 113039 ||| ||||||||| ||| |||||| |||| | ||||| ||||| || ||||| || Sbjct 694982 TTAAGAAACATGGTG-TACGCAACTCTTTACTACTTGCACCCATGCCAACCGCTTCAACG 695040 Query 113040 GCACAGATTCTCGGTAATAATGAATGTTTCGAGCCAATTACAAGT--AATATTTATGTCC 113097 ||||| || | ||||||||||||| ||| ||||| |||| | ||||||||| | Sbjct 695041 GCACAAATAATGGGTAATAATGAATCTTTTGAGCC--GTACACCTCCAATATTTATACTC 695098 Query 113098 GACGTGTTCTAGCAGGTGAGTTT 113120 | ||||| || | ||||||||| Sbjct 695099 GCCGTGTGCTTTCCGGTGAGTTT 695121 >seq333 Length=5851039 Score = 105 bits (116), Expect = 2e-17 Identities = 117/155 (75%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| |||| ||| | |||||||||||| |||||||| |||| ||||||||||| Sbjct 3373648 TTCAATCGGCAGCCAACGCTGCATAAAATGAGTATGATGGGTCATCGTGTCAAAGTATTG 3373589 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCT---TATAATGCGGATTTT 305452 | | | |||||| || | ||| || ||||||| || ||||| || ||||| Sbjct 3373588 CCCTGGTCGACATTCCGTATGAATTTAT---CTTGTACCTCTCCGTATAACGCTGATTTC 3373532 Query 305453 GATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||| ||||||||||| ||||||| || ||||| Sbjct 3373531 GATGGTGATGAAATGAACTTGCATGTGCCACAATC 3373497 Score = 95.1 bits (104), Expect = 3e-14 Identities = 173/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945 || || | |||| |||| ||||| | ||||| || || | || ||||| | || Sbjct 3374092 TTGCAGTTTCATGTTGCCACATTGGTCGATAACGACATGCCCGG---TATGCCACGAGCT 3374036 Query 304946 ---CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGT 305002 |||| ||| || | |||| | || | ||||| ||| | || || ||||| ||| Sbjct 3374035 ATGCAAAAATCCGGAAAACCTCTTAAAGCTATTAAAGCGCGCTTGAAGGGAAAAGAAGGT 3373976 Query 305003 CGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACA 305062 ||||||||||||||| | ||||| || ||||| ||||| |||| | | |||||||||| Sbjct 3373975 CGTATTCGAGGTAATTTGATGGGTAAGCGTGTAGATTTCTCTGCACGTACTGTAATCACA 3373916 Query 305063 CCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTA 305122 || ||| | | | || | || || | || || ||| | ||||| ||| || Sbjct 3373915 CCAGATCCGAATTTGCGTATCGATCAAGTTGGCGTGCCACGTTCCATTGCGCAAAACTTA 3373856 Query 305123 ACATTTCCAGAG 305134 |||||||||||| Sbjct 3373855 ACATTTCCAGAG 3373844 >seq1387 Length=2789183 Score = 95.1 bits (104), Expect = 3e-14 Identities = 120/164 (73%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 |||||| ||| ||||| || | || ||| | |||||| | || || |||||||| Sbjct 1016726 CATTTGCGTGATAATGACCTTGTAATTTTTAATCGCCAACCAACTCTACACAAAATGTCA 1016667 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 ||||||| |||| |||||||| ||| | | | |||||||| | ||| || || Sbjct 1016666 ATGATGGGTCATCGCGTCAAAGTCTTACCGTGGTCCACATTTCGTATGAATCTAT---CT 1016610 Query 305429 TGTAC---GCCTTATAATGCGGATTTTGATGGAGATGAAATGAA 305469 || || |||||||||||| || |||||||| ||||||||||| Sbjct 1016609 TGCACTTCGCCTTATAATGCTGACTTTGATGGCGATGAAATGAA 1016566 >seq1178 Length=3319829 Score = 84.2 bits (92), Expect = 5e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || |||||| | ||||| || || || |||||||| || ||| ||| ||| ||| Sbjct 2252766 GTGCTCTTCAATCGCCAACCCTCTCTACACAAAATGTCCATTATGTGTCACCAAGCTAAA 2252707 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || | | | ||||| || || |||| | | || || ||||| || ||||| ||| Sbjct 2252706 GTGCAACCGCAACGTACATTCCGTTTCAATGAATGCGCCTGCACGCCATACAATGCAGAT 2252647 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 || ||||| |||||||||||| | ||| | || ||| Sbjct 2252646 TTCGATGGTGATGAAATGAATTTACATTTGCCACAA 2252611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186785337893566