Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1310 127 5e-24 seq454 93.3 1e-13 seq145 84.2 5e-11 >seq1310 Length=3030561 Score = 127 bits (140), Expect = 5e-24 Identities = 167/228 (73%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| |||||| || || || || || ||||||||||| || || Sbjct 644978 AAAATG---CAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGAG 645034 Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 |||||||| ||||| || ||||| ||| || ||||| |||||||| || || Sbjct 645035 CCATCTGACACCATCGAAAATGTCAAAGCCAAA-ATCCAAGACAAAGAAGGTATCCCACC 645093 Query 206283 GGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGA 206342 || ||| | | ||||||||||| || || ||||||||||| | |||||| |||| Sbjct 645094 AGATCAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGA 645153 Query 206343 TTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| |||| || ||||| || |||||| | || ||| | || || Sbjct 645154 TTACAATATCCAAAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTGCG 645201 >seq454 Length=983520 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| |||||||| || ||||| || | || Sbjct 254432 AAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGAGCCATCTGATACCATTGAGAAT 254373 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || ||||| ||| || || ||| | | ||||| Sbjct 254372 GTGAAGGCTAAAATCCAAGACAAGGAAGGTATTCCCCCAGATCAACAACGTTTGATCTTT 254313 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| |||||||||||||||||| | |||||| | || |||||| |||| ||||| || Sbjct 254312 GCCGGCAAGCAGTTGGAAGATGGACGCACTTTGTCTGACTACAACATCCAAAAAGAATC 254254 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| ||||||||||| || ||| || || || |||| || ||| Sbjct 254651 ACCGGCAAAACCATCACTTTGGAGGTTGAACCATCAGATACCATCGAGAATGTGAAGGCC 254592 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || || ||| | | ||||| ||||| ||| Sbjct 254591 AAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAACAACGTTTGATCTTTGCCGGCAAG 254532 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| | ||||||||| | || ||| |||| |||||| |||| || || |||||||| || Sbjct 254531 CAGCTAGAAGATGGACGCACCTTGTCCGACTACAACATCCAAAAGGAATCTACTCTCCA 254473 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| ||||||||||| || ||| || || || |||| || ||| Sbjct 254879 ACCGGCAAAACCATCACTTTGGAGGTCGAACCATCAGATACCATCGAGAATGTCAAGGCC 254820 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| ||| || || ||| | | || || ||||| || Sbjct 254819 AAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAACAACGTTTGATTTTTGCCGGCAAA 254760 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || ||||||| ||| | |||||| | || |||||| |||| || |||||||| ||||| Sbjct 254759 CAACTGGAAGACGGACGCACTTTGTCTGACTACAACATCCAAAAGGAGTCTACCCTTCA 254701 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || || ||| |||| |||||| ||||| || ||||| Sbjct 255907 AAGACCCTAACTGGCAAGACCATTACTCTGGAGGTGGAACCATCTGATACCATCGAAAAT 255848 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--ATC 206301 || ||| ||||| ||||| |||||||| ||| || || |||| || || || Sbjct 255847 GTGAAGGCCAAGATCCAAGACAAAGAAGGTATTCCCCCAGA---TCAACAGCGTTTGATT 255791 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||||| || |||||||||||||||||| | || || ||||||||||| Sbjct 255790 TTCGCTGGTAAGCAGTTGGAAGATGGACGTACATTATCCGATTACAAC 255743 >seq145 Length=1338480 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 204776 GTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 204835 |||||||| || |||| |||||||||||| ||||| | ||||||||||| || ||||| Sbjct 898841 GTAGACTCCTTTTGGATATTATAGTCAGCTAAAGTACGACCATCTTCCAGTTGTTTTCCC 898900 Query 204836 GCGAAGATAAGCCGTTGTTGA 204856 ||||| || | ||||||||| Sbjct 898901 GCGAAAATTAAACGTTGTTGA 898921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181793453405326