Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq1310 113 4e-20
seq454 104 2e-17
seq145 98.7 9e-16
>seq1310
Length=3030561
Score = 113 bits (124), Expect = 4e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| ||||| ||||| || | | ||||||| ||||| || ||||| ||| || ||
Sbjct 645202 ACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGT 645143
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| |||||| | ||||| |||| |||| | ||| ||||||||||| || || ||
Sbjct 645142 GCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACC 645083
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|||||| || ||||| ||| | | ||| | || || | ||||| || || |
Sbjct 645082 TTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAA 645023
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || ||||||||||| ||||| | |||||||||||
Sbjct 645022 AGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981
>seq454
Length=983520
Score = 104 bits (114), Expect = 2e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
|||||| ||||| |||||||| | | || || ||||| |||||||||||| || |||
Sbjct 254454 ACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGT 254513
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| |||||| ||||| || |||| | |||| | ||| |||||||||||||| || ||
Sbjct 254514 GCGTCCATCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACC 254573
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
||| || || || || |||| | || | ||||| | || || || || |
Sbjct 254574 TTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAACCTCCAA 254633
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | ||||| || |||| || || | ||| || |||||
Sbjct 254634 AGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254675
Score = 100 bits (110), Expect = 3e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|| |||||||| ||||||||||| || || || |||||| | ||| || |||| |
Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| | ||| ||||||||||| || || ||||| || || ||||| ||||
Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | ||||| | ||||| ||||| | || | ||||| || |||| ||||||
Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433
Query 132110 ATGAAAATCTGCATG 132124
| |||||| ||||||
Sbjct 254434 ACGAAAATTTGCATG 254448
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
|||||||| | | | || || ||||| |||||||||||| | ||||| ||||||
Sbjct 253528 ACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGTCCATCTTCC 253587
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
||||| ||||| | | || | |||||||||||||||||| || ||||| || ||
Sbjct 253588 AGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTGTCTTGG 253647
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
|| || |||| | || | ||||| | || || ||||| | || | || ||
Sbjct 253648 ATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACTTCCAAGGTGATGGTCTTG 253707
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| |||| ||| || | |||||| |||||
Sbjct 253708 CCCGTCAAAGTCTTAACGAAAATTTGCAT 253736
Score = 91.5 bits (100), Expect = 1e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
||||| ||||| |||||||| | | | ||||| ||||| ||||||||||| || ||
Sbjct 254683 CGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTG 254742
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| ||||| || ||||| |||| | | || | ||| ||||||||||| || || |||
Sbjct 254743 CGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCT 254802
Query 132023 TCTTTATC 132030
|| |||||
Sbjct 254803 TCCTTATC 254810
>seq145
Length=1338480
Score = 98.7 bits (108), Expect = 9e-16
Identities = 153/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGA 131967
|||| || || |||| | | ||||| ||||| || || ||||| ||| | | ||||
Sbjct 898823 CGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCTAAAG-TACGACC 898881
Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027
|||||| || ||||| || | | |||| ||| |||||||| || || || ||||||||
Sbjct 898882 ATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGAATACCTTCTTT 898941
Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087
||| ||||||| || | || || | |||||| | || || || || | || |
Sbjct 898942 ATCTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGTGAT 899001
Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| ||||| || || ||||| | |||||| |||||
Sbjct 899002 GGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476600440502160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |