Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq145 118 9e-22 seq1762 111 1e-19 seq1310 109 5e-19 seq454 89.7 5e-13 seq924 84.2 2e-11 >seq145 Length=1338480 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || || || | ||||| | || |||||| || Sbjct 899037 ATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCG 898978 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||||||||| || || ||||||| |||||||| ||||| || |||||||| Sbjct 898977 GATACTATCGAGCATGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCCCCCGATCAA 898918 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 ||| | | |||| || || |||||||| ||||||| | | | | | ||| || || || Sbjct 898917 CAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCGTACT-TTAGCTGACTATAA 898859 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 ||| ||||| || || ||| | || |||||| | | | ||||| ||| Sbjct 898858 TATCCAAAAGGAGTCTACCTTACACTTAGTGCTGCGTCTTAGAGGTGGA 898810 >seq1762 Length=809008 Score = 111 bits (122), Expect = 1e-19 Identities = 922/1464 (63%), Gaps = 65/1464 (4%) Strand=Plus/Minus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 ||||||||||| || | ||| || || || || || | || ||| |||||||| || ||| Sbjct 695474 ACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCGGTTTTT 695415 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTA--TAGCTCGGATCGG 136756 ||||| | ||| |||| ||||||||| | || ||| || | || || | Sbjct 695414 AAACCTGCTTTCCAACCATAAAAATGTATAGAAGT--AAGTTTGCCGTAATTAGGTTCTG 695357 Query 136757 CCACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGT 136816 | ||| | ||| | ||||| || || ||||| | | || || || || ||||| | Sbjct 695356 CTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGCCATTT 695297 Query 136817 TCAATAGTACTTTTTGCTTAATT-TCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGC 136875 | | | | | ||||| | || | |||||| |||||||| | || || | || | Sbjct 695296 TTA-TGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTATGTTTTGG 695238 Query 136876 GGAATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTT---TCATCATGAGA 136932 || || || || || |||| || || | | |||| |||| | |||| | Sbjct 695237 GGTATAGATTCAATGTTTTGTATTGAACCACGGCTAGTGATAATTTGATTTTTCATATCA 695178 Query 136933 TCAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGA 136992 ||| | | || | || | || | | | | ||| || ||||| || ||| Sbjct 695177 TCATCCCA---TAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAACCTGA 695121 Query 136993 TATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCG 137052 | || || || ||||| | ||| || | ||| ||| ||||||| || ||||| Sbjct 695120 AACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAGATTCA 695061 Query 137053 TTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTC 137112 || ||||||| || ||||| || | || || |||||| || | | || || || Sbjct 695060 TTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAGAGTTG 695001 Query 137113 CGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGATTGTTCGAT 137172 |||| ||| ||| | || || || | ||| |||| ||||| || | ||| Sbjct 695000 CGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTCCATAGTTCAGTCGGC 694941 Query 137173 TGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCATAA 137232 | || ||| ||||| |||| |||| |||| || || | || || ||||| Sbjct 694940 T---TTTTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTTCATAA 694884 Query 137233 GAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATAGTAA 137292 | || || | || || |||| ||| || ||| || ||||||||| Sbjct 694883 GTTTCGTAAGGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCATAGTAA 694824 Query 137293 ATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATATCC 137352 || ||||| | |||| | ||||||| |||| || ||| ||||| || ||| | Sbjct 694823 ATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTCGTAAGG-ATAGCG 694765 Query 137353 AATATAGCGAAA-GCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTAAA 137411 || | || || ||||| | ||||| | ||| |||||||| || | || | || Sbjct 694764 CATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCCTGAA 694705 Query 137412 ATTTGATAT-TTGAGCGCTAACAAGC---GGATAAAAGTTTGCGTCTATAATTCTATTGA 137467 ||| ||| | ||| ||| || || ||||| |||| || || ||| |||| | Sbjct 694704 ATTAGATTTCTTG---GCTT-CAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTA 694649 Query 137468 GATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCGAAGCTTTTAGACT 137527 ||| || ||| | | |||| | ||| || |||||| | |||| | || Sbjct 694648 AATTCCGCGTCACGGTCTTAGTGACTTCCTTGAGGCGTTTAAAATCGTATTTTTT-GTCT 694590 Query 137528 GTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTCTGTAT 137587 | | || |||| |||||| |||||| || ||||| |||||||| || || || Sbjct 694589 GGTG--TAACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTACCTC-GTCA 694533 Query 137588 TGTCGCTGTATTGT--ACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAAATT 137645 || |||| || | |||||||| | ||| | ||| ||| | || || | ||| Sbjct 694532 GGT-GCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATATT 694474 Query 137646 CTTTTGATTGTTTTTCTCGTTGACGTG-ATCTTTATATATCATATACGGAGTTCCGGTTT 137704 || |||||| | || || | || | ||| ||||||| ||||||||| || || || | Sbjct 694473 CTGTTGATTACTCTT-TCTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTCT 694415 Query 137705 CGACTTGAGTCTCAACAATTTTTCTGTGAAGATCCAACGCCAT--------AATTTGTTC 137756 | || || | || | ||| ||| | | || || | | ||| || Sbjct 694414 CCACCTGCGATTCTATAATG-------GAAAACCAAAGGCTTTGGGCTTTAACTTTCTTA 694362 Query 137757 TCTAAACTTGCCTTGAGCTTCAAAACTTTCGTATAGCCGTTTAAATTTTTCGCCCATAAC 137816 | || | |||| |||| | || ||||| | || |||| ||| ||| ||| Sbjct 694361 TTAGCACGT-CCTTCTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAAC 694303 Query 137817 AATCGT-TAGACCCGGACACTCGTCGGGACACATCAACGACCATTTTCCTCCCGTCCT-- 137873 |||| || || ||||||| | |||||||| || ||||| | |||| | || Sbjct 694302 T-TCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCAAT--CCTCATTTGCTTC 694246 Query 137874 AACCCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGCCTTCAT 137933 ||| | | ||| || | ||| |||| | |||| ||| | || | ||| | || Sbjct 694245 AACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGC-TCGAT 694187 Query 137934 A-TCTTCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAAG 137992 || || || |||| |||||||||||||| |||||||||||| ||||||| Sbjct 694186 GCTCCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAG 694127 Query 137993 GCTCGATATAGACGGCCATAGCTCCTTTTCTTTTACCG---CCTTGATCCACATGAC--G 138047 |||| | || | || | ||||||| || ||||||| ||||||||||||| || | Sbjct 694126 GCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATAACGTG 694067 Query 138048 CAACATACTATTAAAGACACGCAA 138071 | || | |||| || |||||||| Sbjct 694066 CTACGT--TATTGAAAACACGCAA 694045 >seq1310 Length=3030561 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 25169 AACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 ||||| ||||| | ||||| |||||| | || || || | ||||| | || ||||| Sbjct 644975 AACAAAATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGA- 645033 Query 25229 GCCAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCC 25287 |||| | || || ||||| | || ||| ||||| || ||||| ||||| || || Sbjct 645034 GCCATCTGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACC 645093 Query 25288 CGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGA 25347 ||||| ||| | | || | || |||||||||| | ||||||| | | | | | ||| Sbjct 645094 AGATCAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGA 645153 Query 25348 TTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||||||||| ||||| || || ||| |||| || ||||| Sbjct 645154 TTACAATATCCAAAAGGAGTCAACCCTTCACTTGGTGTT 645192 >seq454 Length=983520 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || ||||| ||| | ||||| | || |||||| ||| | Sbjct 254903 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTCGAA-CCATC 254845 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| |||||| | || || || || ||||| || ||||| || || ||||| Sbjct 254844 AGATACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCA 254785 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | |||| | |||||||||||| ||||| | | | | | || ||||| Sbjct 254784 ACAACGTTTGATTTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAA 254725 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || ||||| || || ||| ||||||| || || Sbjct 254724 CATCCAAAAGGAGTCTACCCTTCATTTGGTATT 254692 >seq924 Length=13938904 Score = 84.2 bits (92), Expect = 2e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 105763 AAGGGT-TGCACGGCTTTCATGTACACGAATTCGGCGACACGAGCAACGGTTGCACGTCT 105821 |||||| |||| ||||| ||||||||||||||||| |||| | |||||||||||| || Sbjct 10440786 AAGGGTCTGCATGGCTTCCATGTACACGAATTCGGGGACAACACCAACGGTTGCACTTCG 10440727 Query 105822 GCCGGCGAGCATTTCAACCCT 105842 || ||| |||||||||||| Sbjct 10440726 GCTGGCCCTCATTTCAACCCT 10440706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445084351993920