Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq454 89.7 4e-13 seq145 86.0 5e-12 >seq454 Length=983520 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| |||||||| ||||| ||||| ||||| ||| ||||| || || Sbjct 254447 ATGCAAATTTTCGTTAAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGAGCCATCT 254388 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | ||||| ||||| ||||| ||||| | ||| |||||| Sbjct 254387 GATACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAAGGTATTCCCCCAGATCAA 254328 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| ||||| || || |||||| ||| || || |||||| Sbjct 254327 CAACGTTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGACGCACTTTGTCTGACTACAAC 254268 Query 106440 ATACAAAAAGAATC 106453 || ||||||||||| Sbjct 254267 ATCCAAAAAGAATC 254254 >seq145 Length=1338480 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| || ||||| | || || |||||||| || | || |||||| Sbjct 899038 AATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCTC 898979 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || | | || || || ||||||| || |||||||| | ||| ||||| Sbjct 898978 GGATACTATCGAGCATGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCCCCCGATCA 898919 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| | | |||| ||||| |||||| | |||||| | ||| | | || || || Sbjct 898918 ACAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCGTACTTTAGCTGACTATAA 898859 Query 106439 CATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||| || ||||| |||| ||||| Sbjct 898858 TATCCAAAAGGAGTCTACCTTACACTTAGT 898829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402320744474048