Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq454 109 5e-19
>seq454
Length=983520
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
||||||||| | ||| |||||||| |||||||| |||| || || || | || ||
Sbjct 253527 CACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGTCCATCTTC 253586
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
|||||||||||| || || ||||| ||||| || || | ||| | | ||||||||
Sbjct 253587 CAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTGTCTTG 253646
Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706
|||||| ||||| | | | | || || | ||| || |||| ||||| || ||
Sbjct 253647 GATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACTTCCAAGGTGATGGTCTT 253706
Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||||||||| || || || || |||||
Sbjct 253707 GCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| ||||| |||||||| || | ||| || || | || |||| |||||| || |||||
Sbjct 254257 TCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCAAAG 254316
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||| || || || || | |||| | |||||||| ||| || ||||| | |
Sbjct 254317 ATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACATTC 254376
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | || || | || || |||| ||||| ||||| || ||||||||||| ||
Sbjct 254377 TCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTAACG 254436
Query 35726 AATATCTGCAT 35736
|| || |||||
Sbjct 254437 AAAATTTGCAT 254447
Score = 82.4 bits (90), Expect = 7e-11
Identities = 128/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 35555 ATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGC 35614
||||||||||||| || || || | || |||| ||||||||| || || ||||| |||
Sbjct 255741 ATGTTGTAATCGGATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGC 255800
Query 35615 TGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTG 35674
|| || || | |||| | || ||||| |||||| ||||| | || | | ||
Sbjct 255801 TGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGGTA 255860
Query 35675 TCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGC 35734
|| | ||||||||||| || || || || || || | || ||||| || || |||
Sbjct 255861 TCAGATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGC 255920
Query 35735 ATT 35737
|||
Sbjct 255921 ATT 255923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450783423334480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |