Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq454 109 5e-19 >seq454 Length=983520 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | ||| |||||||| |||||||| |||| || || || | || || Sbjct 253527 CACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGTCCATCTTC 253586 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||||||| || || ||||| ||||| || || | ||| | | |||||||| Sbjct 253587 CAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTGTCTTG 253646 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | | || || | ||| || |||| ||||| || || Sbjct 253647 GATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACTTCCAAGGTGATGGTCTT 253706 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||||||| || || || || ||||| Sbjct 253707 GCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| |||||||| || | ||| || || | || |||| |||||| || ||||| Sbjct 254257 TCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCAAAG 254316 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || || || || | |||| | |||||||| ||| || ||||| | | Sbjct 254317 ATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACATTC 254376 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | || || |||| ||||| ||||| || ||||||||||| || Sbjct 254377 TCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTAACG 254436 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 254437 AAAATTTGCAT 254447 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 35555 ATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGC 35614 ||||||||||||| || || || | || |||| ||||||||| || || ||||| ||| Sbjct 255741 ATGTTGTAATCGGATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGC 255800 Query 35615 TGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTG 35674 || || || | |||| | || ||||| |||||| ||||| | || | | || Sbjct 255801 TGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGGTA 255860 Query 35675 TCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGC 35734 || | ||||||||||| || || || || || || | || ||||| || || ||| Sbjct 255861 TCAGATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGC 255920 Query 35735 ATT 35737 ||| Sbjct 255921 ATT 255923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450783423334480