Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1762 149 6e-31 seq145 138 1e-27 seq454 131 2e-25 seq1310 129 6e-25 >seq1762 Length=809008 Score = 149 bits (164), Expect = 6e-31 Identities = 700/1103 (63%), Gaps = 18/1103 (2%) Strand=Plus/Plus Query 8234 CCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCA 8293 ||||||| |||| || || || || | ||||| ||| | || || || ||||| | Sbjct 694394 CCATTATAGAATCGCAGGTGGAGACGGGCACACCGTATATGTTATATAAGGATGCTTGTA 694453 Query 8294 ACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAA 8353 | || || |||||| || | ||||| ||| ||||| ||| | ||| | |||| Sbjct 694454 ATAGAAAGAGTAATCAACAGAATATTGGCACAATTAAATGCAGTAATTTATGCACAGAAA 694513 Query 8354 TTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAA 8413 |||| |||| || || ||||| || || || |||||| |||| ||| | | | Sbjct 694514 TTGTTGAGTATTCAGCACCTGACGAGGTAGCTGTATGCAATTTAGCATCGATTGCCCTCA 694573 Query 8414 ACGCGTTCGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTGC 8473 | ||| ||| | | | ||| ||||| ||| ||| | || | | | Sbjct 694574 ATATGTTTGTTACACCAGACAAAAAA---TACGATTTTAAACGCCTCAAGGAAGTCACTA 694630 Query 8474 AA---GTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAG 8530 | |||||| || |||||| || ||||||||| | || ||||| ||| | Sbjct 694631 AGACCGTGACG---CGGAATTTAAATAAAATCATTGATATAAACCACTATCCATTGCCTG 694687 Query 8531 AAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCG 8590 |||| ||| || | | || | || | || | || || |||||| | || | Sbjct 694688 AAGCCAAGAAATCTAATTTCAGGCATCGTCCGATCGGTATTGGTGTACAAGGTTTAGCAG 694747 Query 8591 ACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAA 8650 |||| || | | ||||| || ||||||||| || |||| | | | || | Sbjct 694748 ACGCATTAATCCTCATGCGCTATCCTTACGAAAGCGAACAAGCATTCCTATTGAATCAAC 694807 Query 8651 AAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAA- 8709 ||||| ||||| | || || || || |||||||||||||| || ||| | || || Sbjct 694808 AAATATTTGAAACAATTTACTATGGTGCTTTAGAAGCCAGCTGCGAA-TTGGCTGAAAAA 694866 Query 8710 -TTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGA 8768 |||||| | |||||| | || | || || | ||| || || || || || || Sbjct 694867 TTTGGGC-CTTACGAAACTTATGAAGGTTCACCGGTTAGCAAAGGTATTTTACAGTATGA 694925 Query 8769 CATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGC 8828 |||||| || | ||| || | |||||||||| || |||||| |||||| Sbjct 694926 TATGTGGGATAAAAAGCCGACTGAACTATGGAATTGGACTGAGTTGAAAGAAAAAATTAA 694985 Query 8829 TCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCA 8888 || ||| | ||||| || | | | || |||||| ||||| | || || || Sbjct 694986 GAAACATGGTGTACGCAACTCTTTACTACTTGCACCCATGCCAACCGCTTCAACGGCACA 695045 Query 8889 AATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGT 8948 ||||||||| || || ||||| |||||||||| |||| ||| | || | || || Sbjct 695046 AATAATGGGTAATAATGAATCTTTTGAGCCGTACACCTCCAATATTTATACTCGCCGTGT 695105 Query 8949 GTTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATCGAAGCGGG 9008 | | |||| || ||| | | || | ||||||| |||| ||| | | ||| ||| Sbjct 695106 GCTTTCCGGTGAGTTTCAGGTTGTAAACCATCATTTGTTGCGTGACCTTACTGAATTGGG 695165 Query 9009 CGTTTACGACGACAAAATGCGCGATGCCATCGT-GGAAGCCAACGGCAGCGTTCAGAACA 9067 | | | || || | ||| || || | |||| || | || |||| Sbjct 695166 CTTATGGGATGATGATATGAAAAATCAAATTATCACTAGCC-GTGGTTCAATACAAAACA 695224 Query 9068 TTGACGCGGTGCCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGCAAA 9127 |||| | | || ||| |||| || |||||||||||||||||||| || | || Sbjct 695225 TTGAATCTATACCCCAAAACATACGCGAACTGTATAAAACCGTTTGGGAGATTTCGGTAA 695284 Query 9128 GCACGCTGATCGGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTA 9187 || || |||||||| ||| | || || ||||| || || |||||||| |||| Sbjct 695285 AAACTTCCATAAAAATGGCTGCTGATCGTGGTGCCTTTATCGACCAAAGTCAATCCTTTA 695344 Query 9188 ACGTGTTCGTAGCCGCACCAACTTACGCTTTGATGTCCAGCATTCATTATTTAACTTGGA 9247 | | |||||| | ||| | ||||| | | || |||| || ||||| Sbjct 695345 ATATACACGTAGCAGAACCTAATTACGGCAAACTTACTTCTATACATTTTTATGGTTGGA 695404 Query 9248 AAATGGGTTTAAAAACAGGCATGTACTATTTGCGCACAAAACCCGCCGCTGAACCTATCA 9307 || ||||||||||| |||||||| |||||||||||||| || || || | | || Sbjct 695405 AAGCAGGTTTAAAAACCGGCATGTATTATTTGCGCACAAAGCCAGCGGCAAATGCCATAC 695464 Query 9308 AATTTACAGTTTTAAACAAAAGC 9330 |||| || | || |||||||| Sbjct 695465 AATTCACCG---TAGACAAAAGC 695484 >seq145 Length=1338480 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||| ||||| || |||| ||| | ||||| || || |||||||| || || ||||| | Sbjct 898810 TCCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGC 898869 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || || || || || ||||| || || ||||| ||||| || |||||||| || Sbjct 898870 TAAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGG 898929 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| |||||||||||| || || || | || || || | ||| || Sbjct 898930 AATACCTTCTTTATCTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGAC 898989 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| ||||| ||||| || | ||||| ||||||||||||||| Sbjct 898990 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCATT 899038 >seq454 Length=983520 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 ||||| || | || || || || |||||||| ||||||||||| | ||| ||| | Sbjct 254689 CGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAA-AGTGCGTCC 254747 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 ||| || || |||||||| |||||||||||||| || ||||| || || || ||||| || Sbjct 254748 GTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCTTCCTT 254807 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 ||||| || || ||||| || | || || || | ||| || || | ||| || Sbjct 254808 ATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGACCTCCAAAGTGAT 254867 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||| ||||| || || |||||||| |||||||| Sbjct 254868 GGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 ||||| || | || || || ||||||||||| |||||||||||| | |||| | Sbjct 254461 CGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCA 254520 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| ||||| ||||| |||||||| || ||||| || || || ||||| || Sbjct 254521 TCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTG 254580 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || || || || || || | || || || | ||| || || | ||| ||| Sbjct 254581 TCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAACCTCCAAAGTGATG 254640 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || || |||||||| |||||||| Sbjct 254641 GTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254675 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 134520 GATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGC 134578 ||||| ||||| ||||||||||| | ||| | || | || || | ||| ||||| || Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAG-TGCGTCCATCTTCCAACTGCTTGCCGGC 254312 Query 134579 AAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGAC 134638 ||| |||||||| || ||||| || || || ||||| || ||||| ||||| || || Sbjct 254313 AAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCAC 254372 Query 134639 CGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTT 134698 || | || || || | || || || | || |||||||| ||||| |||||||| Sbjct 254373 ATTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTT 254432 Query 134699 AACGAAAATTTGCAT 134713 ||||||||||||||| Sbjct 254433 AACGAAAATTTGCAT 254447 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||| | || || || ||||||||||| |||||||||||| Sbjct 253510 CCTCCGCGAAGACGTAGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAT 253569 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || ||||| || || || |||||||||||||| ||||| || || Sbjct 253570 AATGTACGTCCATCTTCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGG 253629 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || || || || | || || || | ||| || Sbjct 253630 ATACCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACT 253689 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||| || || || ||||| ||||||||||||||||| Sbjct 253690 TCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | ||| || || || |||||||||||||| ||||| || || || |||||||| Sbjct 255768 TCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTG 255827 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||| || || || || || | || || || | |||||| || ||||||||| Sbjct 255828 TCTTGGATCTTGGCCTTCACATTTTCGATGGTATCAGATGGTTCCACCTCCAGAGTAATG 255887 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715 || || || |||| || || ||||| |||||||||| Sbjct 255888 GTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCATTT 255924 >seq1310 Length=3030561 Score = 129 bits (142), Expect = 6e-25 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| | ||| || || || |||||||| || ||||| ||| | ||| || Sbjct 645198 AGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGA 645139 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | |||||||| || || |||||||| || ||||| || || || |||||| Sbjct 645138 CCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCT 645079 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| ||||| |||||| || | ||||| || | || || || | ||| Sbjct 645078 TTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTG 645019 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTT 134719 ||||| ||||| || | ||||| || ||||| ||||||||||| Sbjct 645018 ATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCATTTTGTT 644975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505386990631120