Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 149 6e-31
seq145 138 1e-27
seq454 131 2e-25
seq1310 129 6e-25
>seq1762
Length=809008
Score = 149 bits (164), Expect = 6e-31
Identities = 700/1103 (63%), Gaps = 18/1103 (2%)
Strand=Plus/Plus
Query 8234 CCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCA 8293
||||||| |||| || || || || | ||||| ||| | || || || ||||| |
Sbjct 694394 CCATTATAGAATCGCAGGTGGAGACGGGCACACCGTATATGTTATATAAGGATGCTTGTA 694453
Query 8294 ACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAA 8353
| || || |||||| || | ||||| ||| ||||| ||| | ||| | ||||
Sbjct 694454 ATAGAAAGAGTAATCAACAGAATATTGGCACAATTAAATGCAGTAATTTATGCACAGAAA 694513
Query 8354 TTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAA 8413
|||| |||| || || ||||| || || || |||||| |||| ||| | | |
Sbjct 694514 TTGTTGAGTATTCAGCACCTGACGAGGTAGCTGTATGCAATTTAGCATCGATTGCCCTCA 694573
Query 8414 ACGCGTTCGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTGC 8473
| ||| ||| | | | ||| ||||| ||| ||| | || | | |
Sbjct 694574 ATATGTTTGTTACACCAGACAAAAAA---TACGATTTTAAACGCCTCAAGGAAGTCACTA 694630
Query 8474 AA---GTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAG 8530
| |||||| || |||||| || ||||||||| | || ||||| ||| |
Sbjct 694631 AGACCGTGACG---CGGAATTTAAATAAAATCATTGATATAAACCACTATCCATTGCCTG 694687
Query 8531 AAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCG 8590
|||| ||| || | | || | || | || | || || |||||| | || |
Sbjct 694688 AAGCCAAGAAATCTAATTTCAGGCATCGTCCGATCGGTATTGGTGTACAAGGTTTAGCAG 694747
Query 8591 ACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAA 8650
|||| || | | ||||| || ||||||||| || |||| | | | || |
Sbjct 694748 ACGCATTAATCCTCATGCGCTATCCTTACGAAAGCGAACAAGCATTCCTATTGAATCAAC 694807
Query 8651 AAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAA- 8709
||||| ||||| | || || || || |||||||||||||| || ||| | || ||
Sbjct 694808 AAATATTTGAAACAATTTACTATGGTGCTTTAGAAGCCAGCTGCGAA-TTGGCTGAAAAA 694866
Query 8710 -TTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGA 8768
|||||| | |||||| | || | || || | ||| || || || || || ||
Sbjct 694867 TTTGGGC-CTTACGAAACTTATGAAGGTTCACCGGTTAGCAAAGGTATTTTACAGTATGA 694925
Query 8769 CATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGC 8828
|||||| || | ||| || | |||||||||| || |||||| ||||||
Sbjct 694926 TATGTGGGATAAAAAGCCGACTGAACTATGGAATTGGACTGAGTTGAAAGAAAAAATTAA 694985
Query 8829 TCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCA 8888
|| ||| | ||||| || | | | || |||||| ||||| | || || ||
Sbjct 694986 GAAACATGGTGTACGCAACTCTTTACTACTTGCACCCATGCCAACCGCTTCAACGGCACA 695045
Query 8889 AATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGT 8948
||||||||| || || ||||| |||||||||| |||| ||| | || | || ||
Sbjct 695046 AATAATGGGTAATAATGAATCTTTTGAGCCGTACACCTCCAATATTTATACTCGCCGTGT 695105
Query 8949 GTTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATCGAAGCGGG 9008
| | |||| || ||| | | || | ||||||| |||| ||| | | ||| |||
Sbjct 695106 GCTTTCCGGTGAGTTTCAGGTTGTAAACCATCATTTGTTGCGTGACCTTACTGAATTGGG 695165
Query 9009 CGTTTACGACGACAAAATGCGCGATGCCATCGT-GGAAGCCAACGGCAGCGTTCAGAACA 9067
| | | || || | ||| || || | |||| || | || ||||
Sbjct 695166 CTTATGGGATGATGATATGAAAAATCAAATTATCACTAGCC-GTGGTTCAATACAAAACA 695224
Query 9068 TTGACGCGGTGCCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGCAAA 9127
|||| | | || ||| |||| || |||||||||||||||||||| || | ||
Sbjct 695225 TTGAATCTATACCCCAAAACATACGCGAACTGTATAAAACCGTTTGGGAGATTTCGGTAA 695284
Query 9128 GCACGCTGATCGGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTA 9187
|| || |||||||| ||| | || || ||||| || || |||||||| ||||
Sbjct 695285 AAACTTCCATAAAAATGGCTGCTGATCGTGGTGCCTTTATCGACCAAAGTCAATCCTTTA 695344
Query 9188 ACGTGTTCGTAGCCGCACCAACTTACGCTTTGATGTCCAGCATTCATTATTTAACTTGGA 9247
| | |||||| | ||| | ||||| | | || |||| || |||||
Sbjct 695345 ATATACACGTAGCAGAACCTAATTACGGCAAACTTACTTCTATACATTTTTATGGTTGGA 695404
Query 9248 AAATGGGTTTAAAAACAGGCATGTACTATTTGCGCACAAAACCCGCCGCTGAACCTATCA 9307
|| ||||||||||| |||||||| |||||||||||||| || || || | | ||
Sbjct 695405 AAGCAGGTTTAAAAACCGGCATGTATTATTTGCGCACAAAGCCAGCGGCAAATGCCATAC 695464
Query 9308 AATTTACAGTTTTAAACAAAAGC 9330
|||| || | || ||||||||
Sbjct 695465 AATTCACCG---TAGACAAAAGC 695484
>seq145
Length=1338480
Score = 138 bits (152), Expect = 1e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545
||| ||||| || |||| ||| | ||||| || || |||||||| || || ||||| |
Sbjct 898810 TCCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGC 898869
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
| || || || || || ||||| || || ||||| ||||| || |||||||| ||
Sbjct 898870 TAAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGG 898929
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| |||||||| |||||||||||| || || || | || || || | ||| ||
Sbjct 898930 AATACCTTCTTTATCTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGAC 898989
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
|| ||||| ||||| ||||| || | ||||| |||||||||||||||
Sbjct 898990 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCATT 899038
>seq454
Length=983520
Score = 131 bits (144), Expect = 2e-25
Identities = 160/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557
||||| || | || || || || |||||||| ||||||||||| | ||| ||| |
Sbjct 254689 CGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAA-AGTGCGTCC 254747
Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617
||| || || |||||||| |||||||||||||| || ||||| || || || ||||| ||
Sbjct 254748 GTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCTTCCTT 254807
Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677
||||| || || ||||| || | || || || | ||| || || | ||| ||
Sbjct 254808 ATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGACCTCCAAAGTGAT 254867
Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|||||| ||||| || || |||||||| ||||||||
Sbjct 254868 GGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903
Score = 122 bits (134), Expect = 9e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558
||||| || | || || || ||||||||||| |||||||||||| | |||| |
Sbjct 254461 CGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCA 254520
Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618
|| || ||||| ||||| ||||| |||||||| || ||||| || || || ||||| ||
Sbjct 254521 TCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTG 254580
Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678
|| || || || || || || | || || || | ||| || || | ||| |||
Sbjct 254581 TCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAACCTCCAAAGTGATG 254640
Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| ||||| || || |||||||| ||||||||
Sbjct 254641 GTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254675
Score = 114 bits (126), Expect = 1e-20
Identities = 144/195 (74%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 134520 GATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGC 134578
||||| ||||| ||||||||||| | ||| | || | || || | ||| ||||| ||
Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAG-TGCGTCCATCTTCCAACTGCTTGCCGGC 254312
Query 134579 AAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGAC 134638
||| |||||||| || ||||| || || || ||||| || ||||| ||||| || ||
Sbjct 254313 AAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCAC 254372
Query 134639 CGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTT 134698
|| | || || || | || || || | || |||||||| ||||| ||||||||
Sbjct 254373 ATTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTT 254432
Query 134699 AACGAAAATTTGCAT 134713
|||||||||||||||
Sbjct 254433 AACGAAAATTTGCAT 254447
Score = 113 bits (124), Expect = 5e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | || || | ||| | || || || ||||||||||| ||||||||||||
Sbjct 253510 CCTCCGCGAAGACGTAGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAT 253569
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | || || ||||| || || || |||||||||||||| ||||| || ||
Sbjct 253570 AATGTACGTCCATCTTCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGG 253629
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| ||||| || ||||| || || || || || | || || || | ||| ||
Sbjct 253630 ATACCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACT 253689
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| | || ||||| || || || ||||| |||||||||||||||||
Sbjct 253690 TCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736
Score = 98.7 bits (108), Expect = 1e-15
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618
|| || | ||| || || || |||||||||||||| ||||| || || || ||||||||
Sbjct 255768 TCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTG 255827
Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678
||||| || || || || || | || || || | |||||| || |||||||||
Sbjct 255828 TCTTGGATCTTGGCCTTCACATTTTCGATGGTATCAGATGGTTCCACCTCCAGAGTAATG 255887
Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715
|| || || |||| || || ||||| ||||||||||
Sbjct 255888 GTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCATTT 255924
>seq1310
Length=3030561
Score = 129 bits (142), Expect = 6e-25
Identities = 163/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||||||| | ||| || || || |||||||| || ||||| ||| | ||| ||
Sbjct 645198 AGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGA 645139
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || | |||||||| || || |||||||| || ||||| || || || ||||||
Sbjct 645138 CCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCT 645079
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| ||||| ||||| |||||| || | ||||| || | || || || | |||
Sbjct 645078 TTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTG 645019
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTT 134719
||||| ||||| || | ||||| || ||||| |||||||||||
Sbjct 645018 ATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCATTTTGTT 644975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505386990631120
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