Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1762 580 2e-160 seq925 257 2e-63 >seq1762 Length=809008 Score = 580 bits (642), Expect = 2e-160 Identities = 1250/1852 (67%), Gaps = 34/1852 (2%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || || ||||| || | ||| ||||| |||||||| | |||| |||| || || ||| Sbjct 695450 GCTGGCTTTGTGCGCAAATAATACATGCCGGTTTTTAAACCTGCTTTCCAACCATAAAAA 695391 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || ||| || |||||| ||| | || || |||| || ||||| | ||||||||| Sbjct 695390 TGTATAGAAGTAAGTTTGCCGTAATTAGGTTCTGCTACGTGTATATTAAAGGATTGACTT 695331 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 || ||||| || || || | ||| || ||||||||||| | | ||| | ||| ||| Sbjct 695330 TGGTCGATAAAGGCACCACGATCAGCAGCCATTTTTATGGAAGTTTTTACCGAAATCTCC 695271 Query 68575 CAAATAGTCTTAAAAATCTGTTTGA-TATCATCTGGA----AGGCTCG-TATTTTGAATG 68628 |||| || ||| | | ||| | ||| | ||| || || | ||||| || Sbjct 695270 CAAACGGTTTTATACA---GTTCGCGTATGTTTTGGGGTATAGATTCAATGTTTTGTATT 695214 Query 68629 GATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTT 68688 || |||| | |||||| ||| || || ||||||| ||| || || || Sbjct 695213 GAACCACGGCTAGTGATAATTTGATTTTTCATATCATCATCCCATAAGCCCAATTCAGTA 695154 Query 68689 AAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTG 68748 | | | | | ||| | || || | ||||| || || || | ||| | ||||| Sbjct 695153 AGGTCACGCAACAAATGATGGTTTACAACCTGAAACTCACCGGAAAGCACACGGCGAGTA 695094 Query 68749 TAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGAT 68808 |||||||| ||| || || || | |||||||||||| |||| ||||| || ||||| Sbjct 695093 TAAATATTGGAGGTGTACGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAA 695034 Query 68809 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCT 68868 || |||||||| ||||| | | |||| || | | ||||||| | | ||||| ||| Sbjct 695033 GCGGTTGGCATGGGTGCAAGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCT 694974 Query 68869 TTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGA 68928 || | | |||||| ||| || |||| || || ||| | ||| || |||| | Sbjct 694973 TTCAACTCAGTCCAATTCCATAGTTCAGTCGGCTTTTTATCCCACATATCATACTGTAAA 694914 Query 68929 ATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGT 68988 || || || || | ||| || | ||| ||||| ||||| || | |||||| | | Sbjct 694913 ATACCTTTGCTAACCGGTGAACCTTCATAAGTTTCGTAAGGCCCAAATTTTTCAGCCAAT 694854 Query 68989 TCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 69048 || || || || ||||| ||||| || ||||||||||| || || | | ||| | Sbjct 694853 TCGCAGCTGGCTTCTAAAGCACCATAGTAAATTGTTTCAAATATTTGTTGATTCAATAGG 694794 Query 69049 TGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGA 69108 ||||| | || ||| | ||||| | | || || ||||| ||||| || || || Sbjct 694793 AATGCTTGTTCGCTTTCGTAAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGT 694734 Query 69109 ACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAA 69168 || ||||||||||| || | ||| || ||| || | | ||||| || | ||||| Sbjct 694733 ACACCAATACCGATCGGACGATGCCTGAAATTAGATTTCTTGGCTTCAGGCAATGGATAG 694674 Query 69169 TAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAG- 69227 | || ||||| || |||||||| | ||| || || ||| || ||||| || Sbjct 694673 TGGTTTATATCAATGATTTTATTTAAATTCCGCGTCACGGTCTTAGTGACTTCCTTGAGG 694614 Query 69228 --TTTGAGAAAATCAAATCGTCCATCTA---TAACAAACATATTCAGTGCTACAGATGCT 69282 ||| |||||| || | ||| ||||||||||||| || || | |||||| Sbjct 694613 CGTTT---AAAATCGTATTTTTTGTCTGGTGTAACAAACATATTGAGGGCAATCGATGCT 694557 Query 69283 AGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTA 69342 | ||| || || |||||||| | || || ||| | | || ||||| |||| |||| Sbjct 694556 AAATTGCATACAGCTACCTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTA 694497 Query 69343 CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAA 69402 || ||||| || || || | ||| || |||||||||||| | ||||| || ||||| || Sbjct 694496 CTGCATTTAATTGTGCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATAT 694437 Query 69403 AGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTA 69462 | ||| |||| || || || || | ||| ||||| ||||| || ||||| | | | Sbjct 694436 AACATATACGGTGTGCCCGTCTCCACCTGCGATTCTATAATGGAAAACCAAA-GGCTTTG 694378 Query 69463 GCATTTATTACGGTCTT-GTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCG 69519 | |||| || |||| || | | || |||| |||||||| ||| |||| | |||| Sbjct 694377 GGCTTTA--ACTTTCTTATTAGCACGTCCTTCTTGTTCATATTTTGTGTATAACTTTTCG 694320 Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 ||||| || |||||||| || | ||||| ||||| | || ||||||||| |||||||| Sbjct 694319 AATTCTTCACCCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCAA 694260 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | |||| | | ||| || |||||||||| || || ||||| | ||| ||| | | Sbjct 694259 TCCTCATTTGCTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAA 694200 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATA 69699 ||||| | || || || || ||||| |||||||| || | ||| | ||| || | |||| Sbjct 694199 TCTCTAGCTCGATGCTCCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATA 694140 Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759 |||| ||||| || || | ||||| || | |||| ||||||||| || || ||| Sbjct 694139 TCAGCGTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGA 694080 Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTA 69819 || | || | || |||||| | || | || ||| || | | ||||| ||| | Sbjct 694079 TCCACATAACGTGCTACGTTATTGAAAACACGCAACATTGGTACCAAGCCATTTGATGTG 694020 Query 69820 CCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATT 69879 ||||| || || | ||| || | ||| | ||||| ||| | || | || || || Sbjct 694019 CCATTCGTGCCCGCAATCGAAGTGCCTTTAGCGCGTATACAATGAACATTTAAGCCAATA 693960 Query 69880 CCTCCTGCCATTTTAGAGATTAGAGCACA---ACGTTTCAATGTGTCATATATACCCTCT 69936 || || || |||||| || | ||||| | || | |||| | |||| || || Sbjct 693959 CCACCAGCAGATTTAGAAATCAATGCACATTGATGTGCCGATGT---AAATATGCCATCA 693903 Query 69937 ATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995 ||| || || | ||| ||||| |||||||| ||| | ||| | ||| | || | Sbjct 693902 ATGGAGTCGTCGACCATAGTTAA-TAGAAAACATGAAGATAATTGTGGCTGTTTGGTAGC 693844 Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGT 70055 ||| ||| | ||| || || || || || || | ||| ||||||| ||||||||| Sbjct 693843 GGCAGCAAAGAGTGTTGGTGAGGCATGTGTAAAGTAACGTTCTGAAAGCAAATTGTATGT 693784 Query 70056 TTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATAT 70114 || || || | ||||||||| ||| ||| || || || || |||||||| ||||||| Sbjct 693783 GTCGATTGCCGCATCTATATCCTCAC-CATGTATACCAATGGCTACACGCATTAACATAT 693725 Query 70115 GCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTT 70174 |||| || ||||| || ||||| ||| | || | | || || ||| ||||| | Sbjct 693724 GCTGTGGCCGTTCAACAATTTTACCATTCAACTTGAGTAAATAGGAACGTTCAAGAGTCT 693665 Query 70175 TAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATT 70226 ||||||| ||||| || || || || | || |||||||| |||| || Sbjct 693664 TAAACCCGAAATAATTATAACCGAAATCACGATCATAAATAATTGCAGAGTT 693613 >seq925 Length=3171676 Score = 257 bits (284), Expect = 2e-63 Identities = 460/669 (69%), Gaps = 11/669 (2%) Strand=Plus/Minus Query 39487 ACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTC 39546 ||||||||| || || || || || |||| || || |||| || |||| ||| || | Sbjct 2021756 ACAATTCATACCAATTAGGTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTT 2021697 Query 39547 TACGGCCTCTGTTATTAT--CGATGTTAC--TACCTCATCACTCGGTGGATGCAATAAAT 39602 || || || | ||| || | || ||| | ||| || ||| || | |||| Sbjct 2021696 AACTGCTTCAGATATGATTTCAATAATACGTTCCCTG----CTGGGTTTCTGTATCAAAT 2021641 Query 39603 GTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGT 39662 ||| ||||| || || ||||| |||||||||| ||||| || | || || || | Sbjct 2021640 GTTGGAACATCAAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCAT 2021581 Query 39663 TAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG 39722 | || ||||| | || ||||||| |||||| || || |||||||| || | |||||| Sbjct 2021580 TGGAGAATGTTAAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAAC 2021521 Query 39723 ATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG 39782 || |||||| |||||||| || || |||||||||| | | || || | ||| Sbjct 2021520 TGCCGCTAAAGAATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTG 2021461 Query 39783 TATCATT---ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTG 39839 | || | ||||| | | ||||||||||| || ||| ||| |||||| | Sbjct 2021460 CAGACTTTGAAGAAATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCG 2021401 Query 39840 TTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTA 39899 | || || ||||| || | ||| | | ||| | | || |||| |||||| || |||| Sbjct 2021400 TCTCAATTGCATTGAACAAATAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTA 2021341 Query 39900 ACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATC 39959 | | |||||||||||||| || | ||||| || || || ||||| ||||| ||||| | Sbjct 2021340 ATATGCTATACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACC 2021281 Query 39960 TTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTC 40019 || || || | ||| || ||| || || | ||| ||||||||||||| || || | Sbjct 2021280 GCGCCTCCGTTACTTGAACTTCTTGACTGAAACGTTCTACCAAATTTTCATTTACAATAC 2021221 Query 40020 CATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA 40079 |||| ||||||||||| || ||||| || || ||||| | |||| | | || | Sbjct 2021220 CATCCGAGGCGGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAA 2021161 Query 40080 ATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 | ||| |||| | ||| || |||| |||||| ||||| | |||||||| |||| Sbjct 2021160 GTCGTGCCCAATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACG 2021101 Query 40140 CCTCTGCCT 40148 | ||||||| Sbjct 2021100 CTTCTGCCT 2021092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686893293033840