Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 580 2e-160
seq925 257 2e-63
>seq1762
Length=809008
Score = 580 bits (642), Expect = 2e-160
Identities = 1250/1852 (67%), Gaps = 34/1852 (2%)
Strand=Plus/Minus
Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454
|| || ||||| || | ||| ||||| |||||||| | |||| |||| || || |||
Sbjct 695450 GCTGGCTTTGTGCGCAAATAATACATGCCGGTTTTTAAACCTGCTTTCCAACCATAAAAA 695391
Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514
|| ||| || |||||| ||| | || || |||| || ||||| | |||||||||
Sbjct 695390 TGTATAGAAGTAAGTTTGCCGTAATTAGGTTCTGCTACGTGTATATTAAAGGATTGACTT 695331
Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574
|| ||||| || || || | ||| || ||||||||||| | | ||| | ||| |||
Sbjct 695330 TGGTCGATAAAGGCACCACGATCAGCAGCCATTTTTATGGAAGTTTTTACCGAAATCTCC 695271
Query 68575 CAAATAGTCTTAAAAATCTGTTTGA-TATCATCTGGA----AGGCTCG-TATTTTGAATG 68628
|||| || ||| | | ||| | ||| | ||| || || | ||||| ||
Sbjct 695270 CAAACGGTTTTATACA---GTTCGCGTATGTTTTGGGGTATAGATTCAATGTTTTGTATT 695214
Query 68629 GATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTT 68688
|| |||| | |||||| ||| || || ||||||| ||| || || ||
Sbjct 695213 GAACCACGGCTAGTGATAATTTGATTTTTCATATCATCATCCCATAAGCCCAATTCAGTA 695154
Query 68689 AAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTG 68748
| | | | | ||| | || || | ||||| || || || | ||| | |||||
Sbjct 695153 AGGTCACGCAACAAATGATGGTTTACAACCTGAAACTCACCGGAAAGCACACGGCGAGTA 695094
Query 68749 TAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGAT 68808
|||||||| ||| || || || | |||||||||||| |||| ||||| || |||||
Sbjct 695093 TAAATATTGGAGGTGTACGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAA 695034
Query 68809 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCT 68868
|| |||||||| ||||| | | |||| || | | ||||||| | | ||||| |||
Sbjct 695033 GCGGTTGGCATGGGTGCAAGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCT 694974
Query 68869 TTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGA 68928
|| | | |||||| ||| || |||| || || ||| | ||| || |||| |
Sbjct 694973 TTCAACTCAGTCCAATTCCATAGTTCAGTCGGCTTTTTATCCCACATATCATACTGTAAA 694914
Query 68929 ATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGT 68988
|| || || || | ||| || | ||| ||||| ||||| || | |||||| | |
Sbjct 694913 ATACCTTTGCTAACCGGTGAACCTTCATAAGTTTCGTAAGGCCCAAATTTTTCAGCCAAT 694854
Query 68989 TCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 69048
|| || || || ||||| ||||| || ||||||||||| || || | | ||| |
Sbjct 694853 TCGCAGCTGGCTTCTAAAGCACCATAGTAAATTGTTTCAAATATTTGTTGATTCAATAGG 694794
Query 69049 TGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGA 69108
||||| | || ||| | ||||| | | || || ||||| ||||| || || ||
Sbjct 694793 AATGCTTGTTCGCTTTCGTAAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGT 694734
Query 69109 ACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAA 69168
|| ||||||||||| || | ||| || ||| || | | ||||| || | |||||
Sbjct 694733 ACACCAATACCGATCGGACGATGCCTGAAATTAGATTTCTTGGCTTCAGGCAATGGATAG 694674
Query 69169 TAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAG- 69227
| || ||||| || |||||||| | ||| || || ||| || ||||| ||
Sbjct 694673 TGGTTTATATCAATGATTTTATTTAAATTCCGCGTCACGGTCTTAGTGACTTCCTTGAGG 694614
Query 69228 --TTTGAGAAAATCAAATCGTCCATCTA---TAACAAACATATTCAGTGCTACAGATGCT 69282
||| |||||| || | ||| ||||||||||||| || || | ||||||
Sbjct 694613 CGTTT---AAAATCGTATTTTTTGTCTGGTGTAACAAACATATTGAGGGCAATCGATGCT 694557
Query 69283 AGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTA 69342
| ||| || || |||||||| | || || ||| | | || ||||| |||| ||||
Sbjct 694556 AAATTGCATACAGCTACCTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTA 694497
Query 69343 CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAA 69402
|| ||||| || || || | ||| || |||||||||||| | ||||| || ||||| ||
Sbjct 694496 CTGCATTTAATTGTGCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATAT 694437
Query 69403 AGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTA 69462
| ||| |||| || || || || | ||| ||||| ||||| || ||||| | | |
Sbjct 694436 AACATATACGGTGTGCCCGTCTCCACCTGCGATTCTATAATGGAAAACCAAA-GGCTTTG 694378
Query 69463 GCATTTATTACGGTCTT-GTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTCG 69519
| |||| || |||| || | | || |||| |||||||| ||| |||| | ||||
Sbjct 694377 GGCTTTA--ACTTTCTTATTAGCACGTCCTTCTTGTTCATATTTTGTGTATAACTTTTCG 694320
Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579
||||| || |||||||| || | ||||| ||||| | || ||||||||| ||||||||
Sbjct 694319 AATTCTTCACCCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCAA 694260
Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639
| |||| | | ||| || |||||||||| || || ||||| | ||| ||| | |
Sbjct 694259 TCCTCATTTGCTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAA 694200
Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATA 69699
||||| | || || || || ||||| |||||||| || | ||| | ||| || | ||||
Sbjct 694199 TCTCTAGCTCGATGCTCCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATA 694140
Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759
|||| ||||| || || | ||||| || | |||| ||||||||| || || |||
Sbjct 694139 TCAGCGTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGA 694080
Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTA 69819
|| | || | || |||||| | || | || ||| || | | ||||| ||| |
Sbjct 694079 TCCACATAACGTGCTACGTTATTGAAAACACGCAACATTGGTACCAAGCCATTTGATGTG 694020
Query 69820 CCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATT 69879
||||| || || | ||| || | ||| | ||||| ||| | || | || || ||
Sbjct 694019 CCATTCGTGCCCGCAATCGAAGTGCCTTTAGCGCGTATACAATGAACATTTAAGCCAATA 693960
Query 69880 CCTCCTGCCATTTTAGAGATTAGAGCACA---ACGTTTCAATGTGTCATATATACCCTCT 69936
|| || || |||||| || | ||||| | || | |||| | |||| || ||
Sbjct 693959 CCACCAGCAGATTTAGAAATCAATGCACATTGATGTGCCGATGT---AAATATGCCATCA 693903
Query 69937 ATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995
||| || || | ||| ||||| |||||||| ||| | ||| | ||| | || |
Sbjct 693902 ATGGAGTCGTCGACCATAGTTAA-TAGAAAACATGAAGATAATTGTGGCTGTTTGGTAGC 693844
Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGT 70055
||| ||| | ||| || || || || || || | ||| ||||||| |||||||||
Sbjct 693843 GGCAGCAAAGAGTGTTGGTGAGGCATGTGTAAAGTAACGTTCTGAAAGCAAATTGTATGT 693784
Query 70056 TTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATAT 70114
|| || || | ||||||||| ||| ||| || || || || |||||||| |||||||
Sbjct 693783 GTCGATTGCCGCATCTATATCCTCAC-CATGTATACCAATGGCTACACGCATTAACATAT 693725
Query 70115 GCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTT 70174
|||| || ||||| || ||||| ||| | || | | || || ||| ||||| |
Sbjct 693724 GCTGTGGCCGTTCAACAATTTTACCATTCAACTTGAGTAAATAGGAACGTTCAAGAGTCT 693665
Query 70175 TAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATT 70226
||||||| ||||| || || || || | || |||||||| |||| ||
Sbjct 693664 TAAACCCGAAATAATTATAACCGAAATCACGATCATAAATAATTGCAGAGTT 693613
>seq925
Length=3171676
Score = 257 bits (284), Expect = 2e-63
Identities = 460/669 (69%), Gaps = 11/669 (2%)
Strand=Plus/Minus
Query 39487 ACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTC 39546
||||||||| || || || || || |||| || || |||| || |||| ||| || |
Sbjct 2021756 ACAATTCATACCAATTAGGTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTT 2021697
Query 39547 TACGGCCTCTGTTATTAT--CGATGTTAC--TACCTCATCACTCGGTGGATGCAATAAAT 39602
|| || || | ||| || | || ||| | ||| || ||| || | ||||
Sbjct 2021696 AACTGCTTCAGATATGATTTCAATAATACGTTCCCTG----CTGGGTTTCTGTATCAAAT 2021641
Query 39603 GTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGT 39662
||| ||||| || || ||||| |||||||||| ||||| || | || || || |
Sbjct 2021640 GTTGGAACATCAAACACGCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCAT 2021581
Query 39663 TAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG 39722
| || ||||| | || ||||||| |||||| || || |||||||| || | ||||||
Sbjct 2021580 TGGAGAATGTTAAGCCCGGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAAC 2021521
Query 39723 ATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG 39782
|| |||||| |||||||| || || |||||||||| | | || || | |||
Sbjct 2021520 TGCCGCTAAAGAATATGCCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTG 2021461
Query 39783 TATCATT---ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTG 39839
| || | ||||| | | ||||||||||| || ||| ||| |||||| |
Sbjct 2021460 CAGACTTTGAAGAAATCCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCAGGCATCG 2021401
Query 39840 TTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTA 39899
| || || ||||| || | ||| | | ||| | | || |||| |||||| || ||||
Sbjct 2021400 TCTCAATTGCATTGAACAAATAGTCTCTTTGTTTGCCGTCCTTAATATATGTGTCAATTA 2021341
Query 39900 ACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATC 39959
| | |||||||||||||| || | ||||| || || || ||||| ||||| ||||| |
Sbjct 2021340 ATATGCTATACATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACC 2021281
Query 39960 TTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTC 40019
|| || || | ||| || ||| || || | ||| ||||||||||||| || || |
Sbjct 2021280 GCGCCTCCGTTACTTGAACTTCTTGACTGAAACGTTCTACCAAATTTTCATTTACAATAC 2021221
Query 40020 CATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA 40079
|||| ||||||||||| || ||||| || || ||||| | |||| | | || |
Sbjct 2021220 CATCCGAGGCGGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAA 2021161
Query 40080 ATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139
| ||| |||| | ||| || |||| |||||| ||||| | |||||||| ||||
Sbjct 2021160 GTCGTGCCCAATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACG 2021101
Query 40140 CCTCTGCCT 40148
| |||||||
Sbjct 2021100 CTTCTGCCT 2021092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686893293033840
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